Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1829 ATGGCTCAGCTCATTCAGAATCGCCCAGCCATTTTAAACTCCTCGCCGTCGCCGTCGGAGGAGAATGATCGGTCTAGGGCGGCGATGCCGGTCGGTTCGAACCAGAACCGGGTGAAGCGGTCCAGGGAAAACAGCAGCAGCCACCACCCGGTTTTCCGCGGGGTCCGAATGAGAGCGTGGGGCAAATGGGTTTCCGAGATTCGCGAGCCGCGAAAGAAGAGCCGGATCTGGCTCGGCACTTTCTCGACCGCTGAAATGGCCGCACGTGCCCACGACGTGGCCGCTTTAACCATCAAAGGCAACGCCGCGATTCTCAACTTCCCCCAACTCGCCGATCGATTCCCCCGACCCGCGTCCAACTCGCCACGTGACGTGCAGGCCGCCGCCGCCAAAGCCGCATCCATGGAAATCGCCACCCCTCCTCCGCCGTCTCCGCCGTCCTCCTCCGAGGAATTAAGCGAAATCGTGGAGCTGCCGAGTTTGGGGACGAGTTACGAAACGCCCGAGTTGGGGACCGAGTTTGTCTTCGTTGACCCGGTGGAGGGTTGGCTTTATTCTTACCCATGGTATCACAGAGTAAACAATGTGGATCAACTACAAGATTATGAGTTCATCTCAGATTTCGAACCTTTCTTCTCCCAACATTAA 648 57.87 MAQLIQNRPAILNSSPSPSEENDRSRAAMPVGSNQNRVKRSRENSSSHHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTAEMAARAHDVAALTIKGNAAILNFPQLADRFPRPASNSPRDVQAAAAKAASMEIATPPPPSPPSSSEELSEIVELPSLGTSYETPELGTEFVFVDPVEGWLYSYPWYHRVNNVDQLQDYEFISDFEPFFSQH 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29557891 29558866 - Sed0012618.1 Sed12g1829 732785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1829 215 CDD AP2 52 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 36 153 IPR051032 -
Sed12g1829 215 SMART rav1_2 51 114 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 MobiDBLite consensus disorder prediction 1 50 - -
Sed12g1829 215 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 FunFam Ethylene-responsive transcription factor 2 50 109 - -
Sed12g1829 215 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 MobiDBLite consensus disorder prediction 115 151 - -
Sed12g1829 215 Pfam AP2 domain 50 100 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677(InterPro)
Sed12g1829 215 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed12g1829 215 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1479 Sed-Chr3:9448969 Sed12g1829 Sed-Chr12:29557891 7.80E-38 dispersed
Sed11g0054 Sed-Chr11:512499 Sed12g1829 Sed-Chr12:29557891 8.60E-47 dispersed
Sed12g1396 Sed-Chr12:11439726 Sed12g1829 Sed-Chr12:29557891 2.40E-41 dispersed
Sed12g1463 Sed-Chr12:15179252 Sed12g1829 Sed-Chr12:29557891 5.50E-19 dispersed
Sed12g1829 Sed-Chr12:29557891 Sed13g0173 Sed-Chr13:1119894 2.40E-27 dispersed
Sed12g1829 Sed-Chr12:29557891 Sed03g1737 Sed-Chr3:11366227 4.90E-41 wgd
Sed12g1829 Sed-Chr12:29557891 Sed06g2173 Sed-Chr6:45482245 5.80E-34 wgd
Sed12g1829 Sed-Chr12:29557891 Sed07g1437 Sed-Chr7:11115421 2.90E-33 wgd
Sed12g1829 Sed-Chr12:29557891 Sed08g0804 Sed-Chr8:6325078 1.00E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40245 PF00847 AP2 1.90E-13 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1829 K09286 - csv:101219745 267.7