Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1837 | ATGGGTTGCGTTTATTCGAGGGTTTGCATTGGGGCTACGACGCCAAGATCTTCGCGAATAGCCGAAACCCTTAACGCTAAAACCGTCGCTGAAATTGACGCGATCTGTTCTTCGTCTAGCCAAGAAGGTGAAATCGGCGACCGAGTGAATCAACTGAATTCAAGAGATTCAGAAGTGGGAATCACCAGACTCTCGAGAGTTTCGTCGCAGTTTTTGCCTGCCGATGGGTCTCGGACCGTCAAAGTTCCTTCAGGAAACTTCGAATTGCGATATTCGTTCCTTTCGCAAAGAGGGTATTATCCAGATGCCCTTGATAAGGCGAATCAAGACAGTTTCTGCATCCACACCCCATTTGGGAACAGCCCAGATGACCATTTCTTCGGGGTTTTCGACGGACATGGAGAATTCGGAACACAATGCTCGCAGTTTGTGAAGCGGAAGCTCTGTGAGAATTTACTTAGGAGTAGTAGGTTCCATAGTGATGCAGTTGAGGCTTGTCATGCGGCGTATTTGACGACGAATTCGCAGTTGCACGCGGATATGTTGGATGATAGTATGAGTGGTACCACTGCTATTACTGTTTTGGTTAGAGGTAGGACTATATATGTTTCTAATTCAGGCGATTCGAGAGCGGTTTTAGCGGAGCAGAGAGGGAAGGAAGTTGTGGCTGTTGACCTCTCAATCGACCAAACTCCGTTCCGGACCGACGAACTTGAGCGTGTTAAGCTCTGTGGTGCTAGAGTTCTTACATTAGATCAGATTGAGGGGCTGAAGAACCCTGATGTTCAGTGTTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTCTGGGTTCCTAATAGCATATATCCTGGCACTGCTTTTACGAGAAGTATAGGTGACTCGGTTGCCGAGACGATTGGAGTTGTGGCCACACCTGAAATTGTAGTTTTGGAGTTGACACCCAATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTTTTTGAGTTTCTTTCTAGCCAAACTGTGGTTGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCGATTGTGGCCGAGTCTTACCGACTTTGGCTTCAATTTGAGACTCGAACTGATGATATCACTGTTATCGTGGTGCATATTAGTGGGCTAACCAATACGATTACTAGCGAATCGACAAGATCCAGTGGAGGTGGGTTTGTTCGATCCGCTGTTCCTCAAGTTGTGGAGGTCACAGGATCAGAATCTCCCTCTACCTTTGGCTGGAATAGAAACAATCGTGCAAGACAAGATTTGTCAAGGGCACGTCTCCGAGCTATCGAAAGTTCCCTAGAGAATGGGCAAGTCTGGGTGCCTCCATCTCCTGCTCACAGAAAGACATGGGAAGAAGAAGCACATATTGAACGAGCACTACATGACCATTTTCTCTTCAGAAAACTAACGGATTCTCAATGCCAAGTTTTATTAGATTGCATGCAAAGAGTTGAGGTTATCCCAGGGCAAATTGTAGTTGAACAGGGCGGCGAAGGTGACTGTTTTTATGTTGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGTCATGGAGAGGTTCCTCGAGTTCTGCAGCATTATACAGCTGAGAAGCTATCTTCCTTTGGCGAACTGGCTTTGATGTATAACAAGCCACTTCAAGCCTCGGTACGTGCTGTGACGAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATCTCTGAGTTTTCTAACTTATCATCTTTGAAATTGCTTCGATCCGTGAACCTTCTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGATTGCCTTTCTGAAGTTACCTACTCAGATGAGCAGCTTATAGTTGATGGGACCGAAGGCTTATGTGCACTGCACATTATTCAAAAGGGACGAGTGAGGATTACTTTTGATGCGGAATTAATGAGCAATTCAAATGTTTACAGCTTCAACTATCCCAGTAATGAGGACGATGTTGAAAAGAGTGGCAAAGAGATCTCTGTTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGCACTTCTTGGTGACCGTATCGGATTCTTACGCGCAGTTGCTGTGGGAGATGTTGTTTGTGCTAGTTTAACGAGGGAAAAGTTTGAATCAGTTGTTGGCCCTTCACCAAAGCTCTCTGACAATGATCAAAAGGCCAAAGAACATTCTTCAGATTCTTTCCATCACTCTGCCAAAAGTATGGATGTTTCAGCTCTTTCAAAAGTCAAGCTCGCTGATCTGGACTGGAAAATGTGTTTATATTCCACTGAATACAGTGAGATCGGGCTAGTTCGATTAAAGAACACAGACACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTCGAAGGAGAAAAATCTAATGAAAAACATAAGTCCTTTGGCTTGTGTGCCACAACTTCTCTGCACTTGTTTAGATCAATCACATGCTGGCATATTGCTGCAAACATGCCTTGCTTGTCCTTTCTCTTCGATACTTCACGTCCCACTCGACGAATCTTCTGCACGTTTCTATGCAGCCTCTCTTGTTATAGCACTGGAAGATTTGCACGAGCTTGGTGTTCTCTACAGAGGAATCTCCCCTGATGTTCTAATGTTGGATCAAACCGGACGCATGCAGTTAGTAGATTTTAGATTTGGGAAAAAAACGTCGGGCGAGAGAACGTATACTATTTGCGGGATGGCGGACTTTTTGGCACCTGAGATAGTTCAGGGCAATGGTCATGGTTTTGCTGCTGACTGGTGGGCGTTGGGAGTCTTAATCTATTTCATGCTGAAAGGGGAAATGCCATTCGGATCGTGGCGACAAAGTGAGCTCGATATTTTCTCGAAAATTGCAAAAGGACAGTTAAGTCTTCCCGAGATTTTCAGTCCTGAAGCCATTGATCTCATCGTGAAGTTACTCGACGTTGATGAGAAGAGAAGACTTGGAAACGAGAACCAAAACTCTGTTAGAAATCATCCCTGGTTTGATGGCATTGATTGGAAGGGGATCCGTGATGGTACCTTTCCGGTTCCCGACACAATCACTTCTCGTGTGGCTCAATATTTGGCGAGCTACCCTGAAGATTGCAGTGGTTCTTTAGTTAAACCACCTCAAGATCACGAAGAACAGGATGCACCCGAGTGGATCAGCGACTGGTAA | 3231 | 45.0 | MGCVYSRVCIGATTPRSSRIAETLNAKTVAEIDAICSSSSQEGEIGDRVNQLNSRDSEVGITRLSRVSSQFLPADGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRSSRFHSDAVEACHAAYLTTNSQLHADMLDDSMSGTTAITVLVRGRTIYVSNSGDSRAVLAEQRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNSIYPGTAFTRSIGDSVAETIGVVATPEIVVLELTPNHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYRLWLQFETRTDDITVIVVHISGLTNTITSESTRSSGGGFVRSAVPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKTWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVNLLSKLTILQLSHIADCLSEVTYSDEQLIVDGTEGLCALHIIQKGRVRITFDAELMSNSNVYSFNYPSNEDDVEKSGKEISVIKKEGSYFGEWALLGDRIGFLRAVAVGDVVCASLTREKFESVVGPSPKLSDNDQKAKEHSSDSFHHSAKSMDVSALSKVKLADLDWKMCLYSTEYSEIGLVRLKNTDTMLSLKRFTRQKVKRLGLEAQVSKEKNLMKNISPLACVPQLLCTCLDQSHAGILLQTCLACPFSSILHVPLDESSARFYAASLVIALEDLHELGVLYRGISPDVLMLDQTGRMQLVDFRFGKKTSGERTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGEMPFGSWRQSELDIFSKIAKGQLSLPEIFSPEAIDLIVKLLDVDEKRRLGNENQNSVRNHPWFDGIDWKGIRDGTFPVPDTITSRVAQYLASYPEDCSGSLVKPPQDHEEQDAPEWISDW | 1076 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 29645402 | 29652031 | - | Sed0028015.1 | Sed12g1837 | 732793 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1837 | 1076 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 475 | 583 | IPR000595 | - | |
Sed12g1837 | 1076 | SUPERFAMILY | PP2C-like | 78 | 382 | IPR036457 | - | |
Sed12g1837 | 1076 | PRINTS | cAMP-dependent protein kinase signature | 720 | 732 | - | - | |
Sed12g1837 | 1076 | PRINTS | cAMP-dependent protein kinase signature | 546 | 555 | - | - | |
Sed12g1837 | 1076 | PRINTS | cAMP-dependent protein kinase signature | 496 | 510 | - | - | |
Sed12g1837 | 1076 | PRINTS | cAMP-dependent protein kinase signature | 511 | 525 | - | - | |
Sed12g1837 | 1076 | Pfam | Protein phosphatase 2C | 118 | 358 | IPR001932 | - | |
Sed12g1837 | 1076 | Gene3D | - | 84 | 381 | IPR036457 | - | |
Sed12g1837 | 1076 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 601 | 727 | IPR000595 | - | |
Sed12g1837 | 1076 | ProSiteProfiles | PPM-type phosphatase domain profile. | 90 | 380 | IPR001932 | - | |
Sed12g1837 | 1076 | SUPERFAMILY | cAMP-binding domain-like | 455 | 584 | IPR018490 | - | |
Sed12g1837 | 1076 | CDD | CAP_ED | 475 | 583 | IPR000595 | - | |
Sed12g1837 | 1076 | Gene3D | Jelly Rolls | 589 | 744 | IPR014710 | - | |
Sed12g1837 | 1076 | CDD | CAP_ED | 601 | 731 | IPR000595 | - | |
Sed12g1837 | 1076 | Gene3D | Transferase(Phosphotransferase) domain 1 | 850 | 1033 | - | - | |
Sed12g1837 | 1076 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 347 | 1076 | - | GO:0004691(PANTHER)|GO:0005952(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER) | |
Sed12g1837 | 1076 | FunFam | Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | 449 | 589 | - | - | |
Sed12g1837 | 1076 | SUPERFAMILY | cAMP-binding domain-like | 594 | 731 | IPR018490 | - | |
Sed12g1837 | 1076 | SMART | serkin_6 | 772 | 1019 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g1837 | 1076 | SMART | cnmp_10 | 601 | 739 | IPR000595 | - | |
Sed12g1837 | 1076 | SMART | cnmp_10 | 475 | 598 | IPR000595 | - | |
Sed12g1837 | 1076 | MobiDBLite | consensus disorder prediction | 1054 | 1076 | - | - | |
Sed12g1837 | 1076 | MobiDBLite | consensus disorder prediction | 724 | 746 | - | - | |
Sed12g1837 | 1076 | Gene3D | Jelly Rolls | 444 | 583 | IPR014710 | - | |
Sed12g1837 | 1076 | SMART | PP2C_4 | 86 | 378 | IPR001932 | - | |
Sed12g1837 | 1076 | ProSiteProfiles | Protein kinase domain profile. | 746 | 1019 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g1837 | 1076 | FunFam | Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein | 85 | 382 | - | - | |
Sed12g1837 | 1076 | Gene3D | Phosphorylase Kinase; domain 1 | 769 | 849 | - | - | |
Sed12g1837 | 1076 | MobiDBLite | consensus disorder prediction | 1058 | 1076 | - | - | |
Sed12g1837 | 1076 | CDD | PP2Cc | 106 | 380 | IPR001932 | - | |
Sed12g1837 | 1076 | ProSitePatterns | PPM-type phosphatase domain signature. | 126 | 134 | IPR000222 | GO:0043169(InterPro) | |
Sed12g1837 | 1076 | MobiDBLite | consensus disorder prediction | 732 | 746 | - | - | |
Sed12g1837 | 1076 | Pfam | Cyclic nucleotide-binding domain | 495 | 583 | IPR000595 | - | |
Sed12g1837 | 1076 | SUPERFAMILY | Protein kinase-like (PK-like) | 770 | 1046 | IPR011009 | - | |
Sed12g1837 | 1076 | Pfam | Protein kinase domain | 776 | 1019 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g2185 | Sed-Chr6:45618828 | Sed12g1837 | Sed-Chr12:29645402 | 1.30E-117 | dispersed | |
Sed06g2186 | Sed-Chr6:45618828 | Sed12g1837 | Sed-Chr12:29645402 | 4.10E-117 | dispersed | |
Sed12g1837 | Sed-Chr12:29645402 | Sed04g3758 | Sed-Chr4:46261632 | 9.10E-27 | dispersed | |
Sed12g1837 | Sed-Chr12:29645402 | Sed06g2184 | Sed-Chr6:45618828 | 3.80E-118 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80017 | PF00069 | Pkinase | 2.30E-33 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1837 | - | - | - | 0.0 |