Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1837 ATGGGTTGCGTTTATTCGAGGGTTTGCATTGGGGCTACGACGCCAAGATCTTCGCGAATAGCCGAAACCCTTAACGCTAAAACCGTCGCTGAAATTGACGCGATCTGTTCTTCGTCTAGCCAAGAAGGTGAAATCGGCGACCGAGTGAATCAACTGAATTCAAGAGATTCAGAAGTGGGAATCACCAGACTCTCGAGAGTTTCGTCGCAGTTTTTGCCTGCCGATGGGTCTCGGACCGTCAAAGTTCCTTCAGGAAACTTCGAATTGCGATATTCGTTCCTTTCGCAAAGAGGGTATTATCCAGATGCCCTTGATAAGGCGAATCAAGACAGTTTCTGCATCCACACCCCATTTGGGAACAGCCCAGATGACCATTTCTTCGGGGTTTTCGACGGACATGGAGAATTCGGAACACAATGCTCGCAGTTTGTGAAGCGGAAGCTCTGTGAGAATTTACTTAGGAGTAGTAGGTTCCATAGTGATGCAGTTGAGGCTTGTCATGCGGCGTATTTGACGACGAATTCGCAGTTGCACGCGGATATGTTGGATGATAGTATGAGTGGTACCACTGCTATTACTGTTTTGGTTAGAGGTAGGACTATATATGTTTCTAATTCAGGCGATTCGAGAGCGGTTTTAGCGGAGCAGAGAGGGAAGGAAGTTGTGGCTGTTGACCTCTCAATCGACCAAACTCCGTTCCGGACCGACGAACTTGAGCGTGTTAAGCTCTGTGGTGCTAGAGTTCTTACATTAGATCAGATTGAGGGGCTGAAGAACCCTGATGTTCAGTGTTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTCTGGGTTCCTAATAGCATATATCCTGGCACTGCTTTTACGAGAAGTATAGGTGACTCGGTTGCCGAGACGATTGGAGTTGTGGCCACACCTGAAATTGTAGTTTTGGAGTTGACACCCAATCATCCTTTCTTTGTTGTTGCTAGTGATGGGGTTTTTGAGTTTCTTTCTAGCCAAACTGTGGTTGACATGGTTTCTAAATATAAAGATCCCCGTGATGCTTGTGCTGCGATTGTGGCCGAGTCTTACCGACTTTGGCTTCAATTTGAGACTCGAACTGATGATATCACTGTTATCGTGGTGCATATTAGTGGGCTAACCAATACGATTACTAGCGAATCGACAAGATCCAGTGGAGGTGGGTTTGTTCGATCCGCTGTTCCTCAAGTTGTGGAGGTCACAGGATCAGAATCTCCCTCTACCTTTGGCTGGAATAGAAACAATCGTGCAAGACAAGATTTGTCAAGGGCACGTCTCCGAGCTATCGAAAGTTCCCTAGAGAATGGGCAAGTCTGGGTGCCTCCATCTCCTGCTCACAGAAAGACATGGGAAGAAGAAGCACATATTGAACGAGCACTACATGACCATTTTCTCTTCAGAAAACTAACGGATTCTCAATGCCAAGTTTTATTAGATTGCATGCAAAGAGTTGAGGTTATCCCAGGGCAAATTGTAGTTGAACAGGGCGGCGAAGGTGACTGTTTTTATGTTGTTGGCAGTGGAGAATTTGAGGTCTTGGCAACCCAGGAAGAAAGTCATGGAGAGGTTCCTCGAGTTCTGCAGCATTATACAGCTGAGAAGCTATCTTCCTTTGGCGAACTGGCTTTGATGTATAACAAGCCACTTCAAGCCTCGGTACGTGCTGTGACGAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATCTCTGAGTTTTCTAACTTATCATCTTTGAAATTGCTTCGATCCGTGAACCTTCTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGATTGCCTTTCTGAAGTTACCTACTCAGATGAGCAGCTTATAGTTGATGGGACCGAAGGCTTATGTGCACTGCACATTATTCAAAAGGGACGAGTGAGGATTACTTTTGATGCGGAATTAATGAGCAATTCAAATGTTTACAGCTTCAACTATCCCAGTAATGAGGACGATGTTGAAAAGAGTGGCAAAGAGATCTCTGTTATTAAGAAAGAGGGAAGTTATTTTGGTGAATGGGCACTTCTTGGTGACCGTATCGGATTCTTACGCGCAGTTGCTGTGGGAGATGTTGTTTGTGCTAGTTTAACGAGGGAAAAGTTTGAATCAGTTGTTGGCCCTTCACCAAAGCTCTCTGACAATGATCAAAAGGCCAAAGAACATTCTTCAGATTCTTTCCATCACTCTGCCAAAAGTATGGATGTTTCAGCTCTTTCAAAAGTCAAGCTCGCTGATCTGGACTGGAAAATGTGTTTATATTCCACTGAATACAGTGAGATCGGGCTAGTTCGATTAAAGAACACAGACACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTCGAAGGAGAAAAATCTAATGAAAAACATAAGTCCTTTGGCTTGTGTGCCACAACTTCTCTGCACTTGTTTAGATCAATCACATGCTGGCATATTGCTGCAAACATGCCTTGCTTGTCCTTTCTCTTCGATACTTCACGTCCCACTCGACGAATCTTCTGCACGTTTCTATGCAGCCTCTCTTGTTATAGCACTGGAAGATTTGCACGAGCTTGGTGTTCTCTACAGAGGAATCTCCCCTGATGTTCTAATGTTGGATCAAACCGGACGCATGCAGTTAGTAGATTTTAGATTTGGGAAAAAAACGTCGGGCGAGAGAACGTATACTATTTGCGGGATGGCGGACTTTTTGGCACCTGAGATAGTTCAGGGCAATGGTCATGGTTTTGCTGCTGACTGGTGGGCGTTGGGAGTCTTAATCTATTTCATGCTGAAAGGGGAAATGCCATTCGGATCGTGGCGACAAAGTGAGCTCGATATTTTCTCGAAAATTGCAAAAGGACAGTTAAGTCTTCCCGAGATTTTCAGTCCTGAAGCCATTGATCTCATCGTGAAGTTACTCGACGTTGATGAGAAGAGAAGACTTGGAAACGAGAACCAAAACTCTGTTAGAAATCATCCCTGGTTTGATGGCATTGATTGGAAGGGGATCCGTGATGGTACCTTTCCGGTTCCCGACACAATCACTTCTCGTGTGGCTCAATATTTGGCGAGCTACCCTGAAGATTGCAGTGGTTCTTTAGTTAAACCACCTCAAGATCACGAAGAACAGGATGCACCCGAGTGGATCAGCGACTGGTAA 3231 45.0 MGCVYSRVCIGATTPRSSRIAETLNAKTVAEIDAICSSSSQEGEIGDRVNQLNSRDSEVGITRLSRVSSQFLPADGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEFGTQCSQFVKRKLCENLLRSSRFHSDAVEACHAAYLTTNSQLHADMLDDSMSGTTAITVLVRGRTIYVSNSGDSRAVLAEQRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNSIYPGTAFTRSIGDSVAETIGVVATPEIVVLELTPNHPFFVVASDGVFEFLSSQTVVDMVSKYKDPRDACAAIVAESYRLWLQFETRTDDITVIVVHISGLTNTITSESTRSSGGGFVRSAVPQVVEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKTWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVNLLSKLTILQLSHIADCLSEVTYSDEQLIVDGTEGLCALHIIQKGRVRITFDAELMSNSNVYSFNYPSNEDDVEKSGKEISVIKKEGSYFGEWALLGDRIGFLRAVAVGDVVCASLTREKFESVVGPSPKLSDNDQKAKEHSSDSFHHSAKSMDVSALSKVKLADLDWKMCLYSTEYSEIGLVRLKNTDTMLSLKRFTRQKVKRLGLEAQVSKEKNLMKNISPLACVPQLLCTCLDQSHAGILLQTCLACPFSSILHVPLDESSARFYAASLVIALEDLHELGVLYRGISPDVLMLDQTGRMQLVDFRFGKKTSGERTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIYFMLKGEMPFGSWRQSELDIFSKIAKGQLSLPEIFSPEAIDLIVKLLDVDEKRRLGNENQNSVRNHPWFDGIDWKGIRDGTFPVPDTITSRVAQYLASYPEDCSGSLVKPPQDHEEQDAPEWISDW 1076
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29645402 29652031 - Sed0028015.1 Sed12g1837 732793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1837 1076 ProSiteProfiles cAMP/cGMP binding motif profile. 475 583 IPR000595 -
Sed12g1837 1076 SUPERFAMILY PP2C-like 78 382 IPR036457 -
Sed12g1837 1076 PRINTS cAMP-dependent protein kinase signature 720 732 - -
Sed12g1837 1076 PRINTS cAMP-dependent protein kinase signature 546 555 - -
Sed12g1837 1076 PRINTS cAMP-dependent protein kinase signature 496 510 - -
Sed12g1837 1076 PRINTS cAMP-dependent protein kinase signature 511 525 - -
Sed12g1837 1076 Pfam Protein phosphatase 2C 118 358 IPR001932 -
Sed12g1837 1076 Gene3D - 84 381 IPR036457 -
Sed12g1837 1076 ProSiteProfiles cAMP/cGMP binding motif profile. 601 727 IPR000595 -
Sed12g1837 1076 ProSiteProfiles PPM-type phosphatase domain profile. 90 380 IPR001932 -
Sed12g1837 1076 SUPERFAMILY cAMP-binding domain-like 455 584 IPR018490 -
Sed12g1837 1076 CDD CAP_ED 475 583 IPR000595 -
Sed12g1837 1076 Gene3D Jelly Rolls 589 744 IPR014710 -
Sed12g1837 1076 CDD CAP_ED 601 731 IPR000595 -
Sed12g1837 1076 Gene3D Transferase(Phosphotransferase) domain 1 850 1033 - -
Sed12g1837 1076 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 347 1076 - GO:0004691(PANTHER)|GO:0005952(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Sed12g1837 1076 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 449 589 - -
Sed12g1837 1076 SUPERFAMILY cAMP-binding domain-like 594 731 IPR018490 -
Sed12g1837 1076 SMART serkin_6 772 1019 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1837 1076 SMART cnmp_10 601 739 IPR000595 -
Sed12g1837 1076 SMART cnmp_10 475 598 IPR000595 -
Sed12g1837 1076 MobiDBLite consensus disorder prediction 1054 1076 - -
Sed12g1837 1076 MobiDBLite consensus disorder prediction 724 746 - -
Sed12g1837 1076 Gene3D Jelly Rolls 444 583 IPR014710 -
Sed12g1837 1076 SMART PP2C_4 86 378 IPR001932 -
Sed12g1837 1076 ProSiteProfiles Protein kinase domain profile. 746 1019 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1837 1076 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 85 382 - -
Sed12g1837 1076 Gene3D Phosphorylase Kinase; domain 1 769 849 - -
Sed12g1837 1076 MobiDBLite consensus disorder prediction 1058 1076 - -
Sed12g1837 1076 CDD PP2Cc 106 380 IPR001932 -
Sed12g1837 1076 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169(InterPro)
Sed12g1837 1076 MobiDBLite consensus disorder prediction 732 746 - -
Sed12g1837 1076 Pfam Cyclic nucleotide-binding domain 495 583 IPR000595 -
Sed12g1837 1076 SUPERFAMILY Protein kinase-like (PK-like) 770 1046 IPR011009 -
Sed12g1837 1076 Pfam Protein kinase domain 776 1019 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g2185 Sed-Chr6:45618828 Sed12g1837 Sed-Chr12:29645402 1.30E-117 dispersed
Sed06g2186 Sed-Chr6:45618828 Sed12g1837 Sed-Chr12:29645402 4.10E-117 dispersed
Sed12g1837 Sed-Chr12:29645402 Sed04g3758 Sed-Chr4:46261632 9.10E-27 dispersed
Sed12g1837 Sed-Chr12:29645402 Sed06g2184 Sed-Chr6:45618828 3.80E-118 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80017 PF00069 Pkinase 2.30E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1837 - - - 0.0