Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1856 ATGAATCCCATCTCCCTCCTCCTCTTCGCCGCCGTCCTCCGCCACACCGCCGCCGCAGCCGTCGGCCATGGCTCCCTCTCCGACGCCGAAGCCCTCTACATCCGCCACCGCCAGCTTCTCTACTACAGAGACGAGTTCGGCGACCGCGGCGAACTCGTCTCCGTCGACCCATCTCTCCGGTTCGAAAACGACCGGATCCGAACCGCCTACATTGCCCTCCAGGCTTGGAAACAAGCCATTTTATCCGACCCGCTGAACCAAACCGCCGATTGGGTCGGATCCAATGTCTGCTCCTACACCGGCGTTTACTGTGCACCCGCATTGGACAACCCAAAAATCCGCACCGTCGCCGGAATCGACCTCAACCACGGCGACATCGCCGGTTACCTCCCGGAAGAGCTCGGCTTACTTGAGGATCTTGCATTGTTCCATATTAACTCCAATAGATTCTGCGGTACTGTTCCTCACAAATTCGACCGTCTTAAATTGCTTCACGAATTGGATCTGAGCAACAATCGCTTCGCCGGGAAGTTCCCCGACGTGGTTCTCCGGCTGCCAGCGTTGAAGTTTTTGGATCTGAGGTTTAACGAATTTGAAGGGGGTGTACCTAAGGAGCTGTTTGATAAGGATTTGGATGCGATTTTTATTAATCATAACAGGTTGAGATTTGAGCTGCCGGAAAATTTTGGGAACTCGCCGGTGTCTGTGATTGTTTTGGCGAACAATAAGTTTCATGGGTGTTTGCCGTCGAGTTTGGGGAACATGACGAGGTTGAATGAGGTTATTATGATGAATAATGGGTTGAATTCTTGTTTGCCGCCGGTGATTGGGCGGTTGAAGAATTTGACGGTGTTTGATGTTAGTTCAAATAAGTTGGTGGGGCCGTTGCCGGAGAGTTTTGGTGGGCTTGCGAGTTTGGAGCAGCTTAATGTGGCGAATAATCTTCTTTCTGGGAACATTCCGGAGGGTATTTGTGAATTGCCTAAGCTTCAGAATTTTACGTTTTCGAATAATTTCTTCTCCGGTGAGCCGCCGGCATGTTTGAGGGTTAGGGATTTTAGTGATCGGAGGAATTGTTTGGCTGGACGGCCGGTGCAGCGGCCGGTTGGGCAATGTAAGTCGTTTTTGGCTAACAATGTTGATTGTAATGCGTTTAAATGTGGTGGTGGTTCTTCTTCTTCGCCGTTTAGTCCTCCGTTTGTTTCGCCCCCTTCGCCGCCGTCTACGGTTGCGCCATCATCTCCTCCGACGTCGTCTCAGCCTCCGAATACACCTCCAGCACCGCCATTGTCGCCAGGTTCTCCACCGTCGCCACATTCATCACCGTCGCCTTCGTCTCCGGCGACACCTTCTGCTCCCTCATTGCCACCTCATTTGCCATCTCCATCGGCGCCGTCGCCTTCGTCACCGCCGACATTACCCTCACCTTCATCGCCGCCGTCTGAGCCGTCTCCATCATCGCCACCTCACGGTCAAACTCCGTCAACTTCACCTGCACCAACCAAACCCTCGCCGTCATCGCCGCCACAAGGCCACACCCCACCGGCACCACCATCGACGTCCGAGCCTACACCATCATCGCCGCCGCATGTTCACACTCCGCCGGCACCTCCTTCGATGTCGGAGCCTTCGCCATCGTCGCCGCCAGAAGGCCACACTCCGCCGGCTCCTCCTTCAACATCGGAGCCTTCGCCGTCCTCGCCGCCTCAAGGTCACACTCCACCGGCGCCTCCTTCAACGTCGGAGCCTTCTCCATCGTCGCCGCCCCAAGGTCACACACCGCCGGCTCCTCCTTCAACGTCGGAGCCTTCTCCATCATCGCCGCCCCAAGGTCACACTCCGCCGGCTCCTCCATCAACGTCCGAGCCCTCGCCGCCGTCTGAGCCATCACCTTCACCGCCGCCACAAGGTCACATTCCGCCGGCAGAGCCTTCTCCGCCAGGAACATCAACTCCGCCTCCGCCGCCACATTTCCCTGATTTCCCTTCGCCGCCACTACCTCCGGTCTACTGCCCAAGAACTCCAAACCCACCATCTCCTCCATTCAACTCACCAAACCCCACCTCTCCGCCGTCGCCGCCGCTACCTGAACTTTCTCCGCCTCCCCCAGTCTATAAATCACCAACCCCACTCCCTCTTCCTTGCATAGAACCTCCTCCTCCCCCGCCACCACCAGTTCATTATCCAACACCATCGTCACCATCACCGCCGATCACCGTGTATCCGCCGCCGTCTCCCTCACCCCCACCGCCGCCCGTCATCTACAAAAGCCCTCCACCACCGCCAACTCCGGCATACGGCGGCCCACTCCCTCCCATTCACGGCGTTCCATACGCCTCCCCACCGCCACCGCCATTTTATTAA 2364 56.98 MNPISLLLFAAVLRHTAAAAVGHGSLSDAEALYIRHRQLLYYRDEFGDRGELVSVDPSLRFENDRIRTAYIALQAWKQAILSDPLNQTADWVGSNVCSYTGVYCAPALDNPKIRTVAGIDLNHGDIAGYLPEELGLLEDLALFHINSNRFCGTVPHKFDRLKLLHELDLSNNRFAGKFPDVVLRLPALKFLDLRFNEFEGGVPKELFDKDLDAIFINHNRLRFELPENFGNSPVSVIVLANNKFHGCLPSSLGNMTRLNEVIMMNNGLNSCLPPVIGRLKNLTVFDVSSNKLVGPLPESFGGLASLEQLNVANNLLSGNIPEGICELPKLQNFTFSNNFFSGEPPACLRVRDFSDRRNCLAGRPVQRPVGQCKSFLANNVDCNAFKCGGGSSSSPFSPPFVSPPSPPSTVAPSSPPTSSQPPNTPPAPPLSPGSPPSPHSSPSPSSPATPSAPSLPPHLPSPSAPSPSSPPTLPSPSSPPSEPSPSSPPHGQTPSTSPAPTKPSPSSPPQGHTPPAPPSTSEPTPSSPPHVHTPPAPPSMSEPSPSSPPEGHTPPAPPSTSEPSPSSPPQGHTPPAPPSTSEPSPSSPPQGHTPPAPPSTSEPSPSSPPQGHTPPAPPSTSEPSPPSEPSPSPPPQGHIPPAEPSPPGTSTPPPPPHFPDFPSPPLPPVYCPRTPNPPSPPFNSPNPTSPPSPPLPELSPPPPVYKSPTPLPLPCIEPPPPPPPPVHYPTPSSPSPPITVYPPPSPSPPPPPVIYKSPPPPPTPAYGGPLPPIHGVPYASPPPPPFY 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29807283 29810387 - Sed0010005.1 Sed12g1856 732812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1856 787 Gene3D Ribonuclease Inhibitor 69 359 IPR032675 -
Sed12g1856 787 MobiDBLite consensus disorder prediction 393 787 - -
Sed12g1856 787 FunFam Leucine-rich repeat extensin-like protein 1 70 231 - -
Sed12g1856 787 SMART LRR_typ_2 185 209 IPR003591 -
Sed12g1856 787 SMART LRR_typ_2 279 302 IPR003591 -
Sed12g1856 787 SMART LRR_typ_2 303 327 IPR003591 -
Sed12g1856 787 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 643 IPR051582 -
Sed12g1856 787 PRINTS Proline rich extensin signature 458 483 - -
Sed12g1856 787 PRINTS Proline rich extensin signature 416 432 - -
Sed12g1856 787 PRINTS Proline rich extensin signature 434 451 - -
Sed12g1856 787 PRINTS Proline rich extensin signature 395 416 - -
Sed12g1856 787 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 249 344 - -
Sed12g1856 787 Pfam Leucine rich repeat N-terminal domain 72 104 IPR013210 -
Sed12g1856 787 SUPERFAMILY L domain-like 71 347 - -
Sed12g1856 787 MobiDBLite consensus disorder prediction 397 787 - -
Sed12g1856 787 Pfam Leucine rich repeat 281 338 IPR001611 GO:0005515(InterPro)
Sed12g1856 787 Pfam Leucine rich repeat 141 197 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1338 Sed-Chr2:49718184 Sed12g1856 Sed-Chr12:29807283 1.10E-45 dispersed
Sed09g0043 Sed-Chr9:356135 Sed12g1856 Sed-Chr12:29807283 4.40E-37 dispersed
Sed11g0071 Sed-Chr11:675560 Sed12g1856 Sed-Chr12:29807283 8.90E-71 dispersed
Sed12g0961 Sed-Chr12:5979910 Sed12g1856 Sed-Chr12:29807283 1.90E-47 dispersed
Sed12g1856 Sed-Chr12:29807283 Sed13g0479 Sed-Chr13:3287185 1.70E-22 dispersed
Sed12g1856 Sed-Chr12:29807283 Sed10g1400 Sed-Chr10:30049672 2.20E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1856 - - - 0.0