Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1857 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGGTGGTTCTTGCTTTGCTAAGAGCTCTTCTTTACATGGCTAGACCAGCAACTTGCAAGCTTGGGAAAATAGCACACTCTACTTTGTACAGAGACGTGGAACAGTATCCTGATGCAACCGAACTCTCAGGAATCATTGTTCTTCAATTGGGTTCTCCTATTTATTATGCTAACTCCAACTACATCAGAGAAAGGATCTTCAGATGGGTTCGTGATGAAAATTCCTTAAATGAATCGGTCCAACATGTACTTCTCGAGCTCAGTGGAGTCACATCAATCGACATGACAGGGATTGAAACTCTGGTCGAAATTCGAAGATCATTACAAGCAAATGGAGTTCAGATGGGAATTGTGAACCCAAGACTGGTGGTGATGGAGAAGATGATAGCATCGGAGTTCACCGGCGTAATCGGAAAAGAAAACATATATTTGTCGGTGGAGGATGGAGTGGAAAGGTGTAACCATTTGCTGAGCAGTCCAAAGAAAAGCTCCGATGCCACGGAAATGGAGCAGCGGGTTTAG 1920 45.26 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSVVLALLRALLYMARPATCKLGKIAHSTLYRDVEQYPDATELSGIIVLQLGSPIYYANSNYIRERIFRWVRDENSLNESVQHVLLELSGVTSIDMTGIETLVEIRRSLQANGVQMGIVNPRLVVMEKMIASEFTGVIGKENIYLSVEDGVERCNHLLSSPKKSSDATEMEQRV 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29818860 29824950 - Sed0000424.1 Sed12g1857 732813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1857 639 ProSiteProfiles STAS domain profile. 501 619 IPR002645 -
Sed12g1857 639 SUPERFAMILY SpoIIaa-like 503 620 IPR036513 -
Sed12g1857 639 Pfam STAS domain 502 614 IPR002645 -
Sed12g1857 639 FunFam Sulfate transporter 31 481 622 - -
Sed12g1857 639 CDD STAS_SulP_like_sulfate_transporter 502 612 - -
Sed12g1857 639 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1857 639 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
Sed12g1857 639 PANTHER SULFATE TRANSPORTER 31 620 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1857 639 Gene3D STAS domain 481 622 IPR036513 -
Sed12g1857 639 NCBIfam sulfate permease 57 614 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1100 Sed-Chr9:34958780 Sed12g1857 Sed-Chr12:29818860 2.90E-193 dispersed
Sed12g0962 Sed-Chr12:5988047 Sed12g1857 Sed-Chr12:29818860 1.00E-198 dispersed
Sed12g1415 Sed-Chr12:11758550 Sed12g1857 Sed-Chr12:29818860 1.30E-159 dispersed
Sed12g1857 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 0.00E+00 dispersed
Sed12g1857 Sed-Chr12:29818860 Sed12g1858 Sed-Chr12:29818860 6.50E-299 tandem
Sed12g1857 Sed-Chr12:29818860 Sed08g0747 Sed-Chr8:5574525 3.60E-233 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1857 K17471 - csv:116402148 1004.59