Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1858 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGGTGGTTCTTGCTTTGCTAAGAGCTCTTCTTTACATGGCTAGACCAGCAACTTGCAAGCTTGGGAAAATAGCACACTCTACTTTGTACAGAGACGTGGAACAGTATCCTGATGCAACCGAACTCTCAGGAATCATTGTTCTTCAATTGGGTTCTCCTATTTATTATGCTAACTCCAACTACATCAGAGAAAGGTAA 1596 45.24 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSVVLALLRALLYMARPATCKLGKIAHSTLYRDVEQYPDATELSGIIVLQLGSPIYYANSNYIRER 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29818860 29824950 - Sed0000424.4 Sed12g1858 732814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1858 531 Gene3D STAS domain 481 531 IPR036513 -
Sed12g1858 531 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
Sed12g1858 531 ProSiteProfiles STAS domain profile. 501 531 IPR002645 -
Sed12g1858 531 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1858 531 NCBIfam sulfate permease 57 530 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1858 531 PANTHER SULFATE TRANSPORTER 31 531 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1858 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 5.40E-299 dispersed
Sed12g1857 Sed-Chr12:29818860 Sed12g1858 Sed-Chr12:29818860 6.50E-299 tandem
Sed12g1858 Sed-Chr12:29818860 Sed12g1859 Sed-Chr12:29818860 3.10E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1858 K17471 - csv:105435742 860.907