Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1859 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGCAACTTGCAAGCTTGGGAAAATAG 1425 45.68 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSQLASLGK 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29818860 29824950 - Sed0000424.5 Sed12g1859 732815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1859 474 NCBIfam sulfate permease 57 471 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1859 474 PANTHER SULFATE TRANSPORTER 31 472 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1859 474 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1859 474 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1859 Sed-Chr12:29818860 Sed12g1863 Sed-Chr12:29819678 5.40E-266 dispersed
Sed12g1858 Sed-Chr12:29818860 Sed12g1859 Sed-Chr12:29818860 3.10E-262 tandem
Sed12g1859 Sed-Chr12:29818860 Sed12g1860 Sed-Chr12:29818860 2.80E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1859 K17471 - csv:105435742 774.622