Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1860 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGGTCAGTAACTAG 1413 45.72 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSVSN 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29818860 29824950 - Sed0000424.8 Sed12g1860 732816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1860 470 PANTHER SULFATE TRANSPORTER 31 468 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1860 470 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
Sed12g1860 470 NCBIfam sulfate permease 57 468 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1860 470 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1860 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 2.10E-262 dispersed
Sed12g1859 Sed-Chr12:29818860 Sed12g1860 Sed-Chr12:29818860 2.80E-262 tandem
Sed12g1860 Sed-Chr12:29818860 Sed12g1861 Sed-Chr12:29819678 3.20E-263 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1860 K17471 - csv:105435742 776.163