Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1861 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGACCAGCAACTTGCAAGCTTGGGAAAATAGCACACTCTACTTTGTACAGAGACGTGGAACAGTATCCTGA 1470 45.71 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSTSNLQAWENSTLYFVQRRGTVS 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29819678 29824950 - Sed0000424.2 Sed12g1861 732817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1861 489 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1861 489 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
Sed12g1861 489 PANTHER SULFATE TRANSPORTER 31 467 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1861 489 NCBIfam sulfate permease 57 466 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1861 Sed-Chr12:29819678 Sed12g1863 Sed-Chr12:29819678 2.20E-262 dispersed
Sed12g1860 Sed-Chr12:29818860 Sed12g1861 Sed-Chr12:29819678 3.20E-263 tandem
Sed12g1861 Sed-Chr12:29819678 Sed12g1862 Sed-Chr12:29819678 2.20E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1861 K17471 - csv:105435742 774.622