Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1862 ATGGGTTCGTGGAAAAGTGAAAAAAATGTGAGCTTTGCGGATCCGAGGCCGTTCGGGAAGAAGCTGAAATCGGATTTGAAAGAGACGTTTTTTCCAGACGATCCGTTCAAGCAGTTTCGTGACGATGATCCGATAAAGAGACTGAAAAAGACTGTACAATATTTCATTCCCATTTTGGAATGGCTTCCTAAATACAACGTAAATATGTTTAAATATGATTTGCTTGCGGGGATTACCATTACTAGCCTTGCAATCCCTCAAGGTATCAGCTACGCCAAGCTTGCCGCCATCCCTCCCATCATCGGCCTTTATTCGAGCTTTGTTCCGCCGTTAATCTATGCGGTGTTGGGAAATTCAAAGCATCTGGCGGTGGGGACGGTGGCGGCGTGTTCGTTGCTGCTAACGGAAGTGATCGGAAAAGTGGCGTCGCCGGATAAAGAGCCAGTGTTGTATCTACATTTGGTTTTCACGGCCACCATGGTCACCGGGGCCATGCAGTTGGCGTTGGGCGTTTTACGATTGGGAATTTTGGTGGATTTCTTATCGCATTCGACGATCCTTGGATTCATGGCAGGGACGGCTGTGATCATTTGCCTTCAGCAACTCAAAGGCTTGTTTGGAGTCATTCATTTCACCCATAAAACCGACGTCTTTTCCGTTATCAATTCCATTATCTCCCTTCGAAATGAGTGGCATTGGCAAAGTGCACTGGCAGGCATCTGCTTCCTCATTTTCCTACAGTTTACTAGGCACCTGAGAAACAAAAAACCAGATCTATTTTGGGTATCAGCAATGGCGCCGATGGTGACAGTGATAGTGGGTTGTTTGGTTGCTTATTTCTTCAAGGGAGATCAGCATGGGATCAAAACTGTGGGCCCCTTGAGCAAAGGAATAAACCCTTTGTCTATTAATGCATTGAACTTTGACTCAAAGTACCTAGCAGCTGTAGTTAAAGTTAGCTTCATTACTGGCCTTGTGGCTTTGGTGGAAGGAATAGCAATTGGTCGCAGCTTTGCCATCACGAAAAATGAACAAGTGGATGGCAACAAAGAAATGATAGCCTTTGGCTTGATGAACATCGTCGGATCTTTAACTTCCTGCTACTTAACCACCGGGCCATTTTCAAAGACTGCAGTGAACTTCAATTCTGGATGTAAAACAGCAATGTCAAACATAGTGATGGCGATTTTCATGGCTCTGACTCTCCTCTTTCTTGCTCCTATCTTCAGTTACACTCCCGCTGTAGCCCTTTCCGCCATTATCATGTCCGCCATGCTTGGCCTCATCAAATATGAAGAAATCTATCATCTTCTCAAGGTCGACAAGTTCGATTTCGCCATTTGTATGGCCGCTTTCTTGGGCGTCACCCTGTTGAGCATGGATGTTGGCCTCATGCTCTCGGTGGTTCTTGCTTTGCTAAGAGCTCTTCTTTACATGGCTAGACCAGCAACTTGCAAGCTTGGGAAAATAGCACACTCTACTTTGTACAGAGACGTGGAACAGTATCCTGATGCAACCGAACTCTCAGGAATCATTGTTCTTCAATTGGGTTCTCCTATTTATTATGCTAACTCCAACTACATCAGAGAAAGGATCTTCAGATGGGTTCGTGATGAAAATTCCTTAAATGAATCGGTCCAACATGTACTTCTCGAGCTCAGTGGAGTCACATCAATCGACATGACAGGGATTGAAACTCTGGTCGAAATTCGAAGATCATTACAAGCAAATGGAGTTCAGGTAAATATTAGACCATCCATCTCAAAAATTATTTAG 1776 44.59 MGSWKSEKNVSFADPRPFGKKLKSDLKETFFPDDPFKQFRDDDPIKRLKKTVQYFIPILEWLPKYNVNMFKYDLLAGITITSLAIPQGISYAKLAAIPPIIGLYSSFVPPLIYAVLGNSKHLAVGTVAACSLLLTEVIGKVASPDKEPVLYLHLVFTATMVTGAMQLALGVLRLGILVDFLSHSTILGFMAGTAVIICLQQLKGLFGVIHFTHKTDVFSVINSIISLRNEWHWQSALAGICFLIFLQFTRHLRNKKPDLFWVSAMAPMVTVIVGCLVAYFFKGDQHGIKTVGPLSKGINPLSINALNFDSKYLAAVVKVSFITGLVALVEGIAIGRSFAITKNEQVDGNKEMIAFGLMNIVGSLTSCYLTTGPFSKTAVNFNSGCKTAMSNIVMAIFMALTLLFLAPIFSYTPAVALSAIIMSAMLGLIKYEEIYHLLKVDKFDFAICMAAFLGVTLLSMDVGLMLSVVLALLRALLYMARPATCKLGKIAHSTLYRDVEQYPDATELSGIIVLQLGSPIYYANSNYIRERIFRWVRDENSLNESVQHVLLELSGVTSIDMTGIETLVEIRRSLQANGVQVNIRPSISKII 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29819678 29824950 - Sed0000424.3 Sed12g1862 732818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1862 591 SUPERFAMILY SpoIIaa-like 503 583 IPR036513 -
Sed12g1862 591 MobiDBLite consensus disorder prediction 1 20 - -
Sed12g1862 591 CDD STAS_SulP_like_sulfate_transporter 502 591 - -
Sed12g1862 591 Pfam STAS domain 502 582 IPR002645 -
Sed12g1862 591 NCBIfam sulfate permease 57 583 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1862 591 Pfam Sulfate permease family 70 451 IPR011547 GO:0016020(InterPro)
Sed12g1862 591 Gene3D STAS domain 481 590 IPR036513 -
Sed12g1862 591 PANTHER SULFATE TRANSPORTER 31 583 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed12g1862 591 ProSiteProfiles STAS domain profile. 501 591 IPR002645 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0747 Sed-Chr8:5574525 Sed12g1862 Sed-Chr12:29819678 3.40E-216 dispersed
Sed12g1857 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 0.00E+00 dispersed
Sed12g1858 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 5.40E-299 dispersed
Sed12g1860 Sed-Chr12:29818860 Sed12g1862 Sed-Chr12:29819678 2.10E-262 dispersed
Sed12g1862 Sed-Chr12:29819678 Sed12g1864 Sed-Chr12:29819678 6.00E-299 dispersed
Sed12g1861 Sed-Chr12:29819678 Sed12g1862 Sed-Chr12:29819678 2.20E-262 tandem
Sed12g1862 Sed-Chr12:29819678 Sed12g1863 Sed-Chr12:29819678 3.50E-262 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1862 K17471 - csv:116402148 934.48