Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1865 ATGGATCAGAATCACTGCAATGGAAATTCAGAATCAAATCTCAACAAAATACCCAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTTGTTGACTCTGTTTCAGGAAAAAGTTTCGAGACGATAGATCCGAGAACCGGCGAGGTTATTACGACGGTGGCCGCCGGCGATAAAGAAGATGTGGATCTGGCCGTTGAAGCAGCCCGTGAAGCTTTTGATCATGGCCGTTGGCCCCGCATGTCTGGCTCTGAGAGGGGGAAAATTATGATGAAACTAGCGGATTTAATGGACGAAAACGTGGAAGAGCTAGCAGCGCTGGATGCAATCGACGGTGGAAAATTGTATAAAATGGGGACGATGGTGGACATCCCGGCGGCTGCAAATATGTTACGGTACTACGCGGGTGCAGCGGATAAAATCCAGGGGGAGGTGTTGAAAATGTCAAGGCCACTTCACGGGTACACGTTGATGGAGCCGATCGGAGTGGTGGGCCACATCATACCGTGGAACTTTCCGACGACGATGTTCTTCCTCAAAGTGGGGCCCTCCTTGGCCGCCGGTTGCACCATGCTCGTCAAACCGGCCGAGCAGACCCCTCTCTCCGCCCTTTTTTACGCCCATCTCGCAAAACTGGCTGGCATTCCAGATGGAGTATTGAACGTTGTGACTGGATTTGGAGCCACTGCCGGATCAGCCATTGCATCCCACATGGACATTGACAAGGTAAGTTTTACAGGATCAACCAAGGTTGGAAGGCTGATAATGAAAGCTGCAAGTGAAAGTAATCTTAAACAAGTGTCGTTGGAATTAGGAGGAAAATCGCCTGTTTTAATCTTCGATGATGCCGATGTTGATAAAGCTGCCGATCTTGCTCTTCTTGCCATTTTTTACAACAAGGGAGAGATTTGTGTGGCTGGATCCCGAGTATTGGTTCAAGAAGGGATTTACAACGAATTTGTGAAAAAGATTAGTGAAAAGGCCAAATCTTGGGTTGTAGGAGACCCTTTTGACCCCAAAGTTCAATATGGACCTCAGGTAGACAAAAGGCAATTGGAGAAAATTCTAATGTACATAGAACATGGCAAAAACGAAGGAGCCACATTGCTGACCGGCGGCAAACGTATAGGCGAAGTTGGGTATTACATAGAGCCAACCATCTTCACAGATGTCAAGGAAGACTCGTTGATCGCGCAAGACGAAATCTTCGGACCAGTCCTCTCCGTTATAAAATTTAAGACGATCGAAGAGGGAATAAAGATTGCGAACAACACAAAGTACGGGCTAGCAGCAGGAATAGTGACGAACAGCATAGACACAATGAATACGGTTTCGAGGTCGATTAGAGCCGGAACCATTTGGGTAAATTGTTACTTCGCATTCGACCCGAGCGCTCCGTTTGGAGGCTACAAGATGAGTGGTTTCGGTAGAGACTCGGGAATGCACGCTGTTCATAAGTATCTTCAAACCAAATCCGTGGTCACTCCGTTGGTTAATACTCCTTGGCTTTGA 1512 47.16 MDQNHCNGNSESNLNKIPKIKFTKLFINGQFVDSVSGKSFETIDPRTGEVITTVAAGDKEDVDLAVEAAREAFDHGRWPRMSGSERGKIMMKLADLMDENVEELAALDAIDGGKLYKMGTMVDIPAAANMLRYYAGAADKIQGEVLKMSRPLHGYTLMEPIGVVGHIIPWNFPTTMFFLKVGPSLAAGCTMLVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGFGATAGSAIASHMDIDKVSFTGSTKVGRLIMKAASESNLKQVSLELGGKSPVLIFDDADVDKAADLALLAIFYNKGEICVAGSRVLVQEGIYNEFVKKISEKAKSWVVGDPFDPKVQYGPQVDKRQLEKILMYIEHGKNEGATLLTGGKRIGEVGYYIEPTIFTDVKEDSLIAQDEIFGPVLSVIKFKTIEEGIKIANNTKYGLAAGIVTNSIDTMNTVSRSIRAGTIWVNCYFAFDPSAPFGGYKMSGFGRDSGMHAVHKYLQTKSVVTPLVNTPWL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29840797 29848120 - Sed0003712.1 Sed12g1865 732821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1865 503 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 27 295 - -
Sed12g1865 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491(InterPro)
Sed12g1865 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491(InterPro)
Sed12g1865 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491(InterPro)
Sed12g1865 503 FunFam Aldehyde dehydrogenase, putative 465 491 - -
Sed12g1865 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 21 495 - GO:0004029(PANTHER)
Sed12g1865 503 SUPERFAMILY ALDH-like 17 499 IPR016161 GO:0016491(InterPro)
Sed12g1865 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491(InterPro)
Sed12g1865 503 FunFam Aldehyde dehydrogenase3 273 462 - -
Sed12g1865 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1865 K12355 - - csv:101219029 849.351
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1685 Sed-Chr7:15029591 Sed12g1865 Sed-Chr12:29840797 1.90E-32 dispersed
Sed12g1865 Sed-Chr12:29840797 Sed12g1906 Sed-Chr12:30211078 5.40E-99 dispersed
Sed03g2695 Sed-Chr3:43232244 Sed12g1865 Sed-Chr12:29840797 5.50E-166 transposed
Sed05g3313 Sed-Chr5:42467690 Sed12g1865 Sed-Chr12:29840797 4.10E-92 transposed
Sed12g1882 Sed-Chr12:30009036 Sed12g1865 Sed-Chr12:29840797 3.70E-162 transposed
Sed12g1865 Sed-Chr12:29840797 Sed08g0748 Sed-Chr8:5615614 2.30E-254 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1865 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 9.3e-216 747.3
Sed08g0748 . 1 490 Aldehyde Dehydrogenase Gene Family AT3G24503 72.0 5.8e-210 728.0
Sed03g2695 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 7.7e-162 568.2
Sed12g1882 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 5.7e-157 552.0
Sed12g1882 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 80.3 6.8e-257 884.0
Sed03g2695 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 1.6e-250 862.8
Sed12g1865 . 10 503 Aldehyde Dehydrogenase Gene Family AT3G48000 54.7 3.7e-162 569.3
Sed08g0748 . 17 490 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-155 547.0
Sed03g2695 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.3e-171 599.0
Sed12g1882 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.3e-164 577.0
Sed12g1865 . 11 347 Aldehyde Dehydrogenase Gene Family AT1G23800 54.9 7.0e-105 378.6
Sed08g0748 . 17 358 Aldehyde Dehydrogenase Gene Family AT1G23800 54.2 7.0e-105 378.6
Sed06g1004 . 2 486 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 3.8e-183 639.0
Sed05g2367 . 16 487 Aldehyde Dehydrogenase Gene Family AT4G34240 66.3 8.4e-183 637.9
Sed05g2368 . 16 335 Aldehyde Dehydrogenase Gene Family AT4G34240 65.6 8.6e-119 425.2
Sed05g2367 . 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 2.9e-178 622.5
Sed06g1004 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 70.8 8.7e-175 610.9
Sed01g3300 . 68 482 Aldehyde Dehydrogenase Gene Family AT1G44170 51.1 2.6e-118 423.3
Sed07g1685 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 1.1e-116 417.9
Sed05g2368 . 77 334 Aldehyde Dehydrogenase Gene Family AT1G44170 74.0 1.2e-110 397.9
Sed01g3301 . 68 355 Aldehyde Dehydrogenase Gene Family AT1G44170 52.1 4.3e-81 299.7
Sed07g1685 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.3 6.3e-185 644.8
Sed05g1142 . 2 478 Aldehyde Dehydrogenase Gene Family AT4G36250 56.0 5.0e-158 555.4
Sed01g3300 . 12 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 1.9e-157 553.5
Sed05g1143 . 2 353 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 3.5e-111 399.8
Sed01g3301 . 12 357 Aldehyde Dehydrogenase Gene Family AT4G36250 53.5 1.1e-109 394.8
Sed05g3313 . 37 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.7 2.3e-233 805.8
Sed06g0796 . 10 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.8 7.6e-233 804.3
Sed10g0810 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0811 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0812 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed08g0168 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.4 2.0e-250 862.4
Sed12g1906 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 79.6 2.9e-246 848.6
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 3.0e-235 812.0
Sed08g0168 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 6.4e-257 884.0
Sed12g1906 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 5.0e-254 874.4
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT3G48170 81.4 4.6e-239 824.7
Sed08g1569 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 2.6e-266 915.2
Sed08g1568 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 3.4e-266 914.8
Sed11g0187 . 1 438 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 4.4e-234 808.1
Sed01g1829 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 78.6 6.0e-256 880.9
Sed08g2577 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2576 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2578 . 17 153 Aldehyde Dehydrogenase Gene Family AT5G62530 74.6 4.1e-55 213.8
Sed04g3105 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 75.2 6.8e-274 940.6
Sed04g3106 . 1 516 Aldehyde Dehydrogenase Gene Family AT3G66658 75.0 1.9e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003336 2 1 7 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 0 49