Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1865 ATGGATCAGAATCACTGCAATGGAAATTCAGAATCAAATCTCAACAAAATACCCAAAATCAAGTTCACAAAGCTCTTCATCAATGGACAATTTGTTGACTCTGTTTCAGGAAAAAGTTTCGAGACGATAGATCCGAGAACCGGCGAGGTTATTACGACGGTGGCCGCCGGCGATAAAGAAGATGTGGATCTGGCCGTTGAAGCAGCCCGTGAAGCTTTTGATCATGGCCGTTGGCCCCGCATGTCTGGCTCTGAGAGGGGGAAAATTATGATGAAACTAGCGGATTTAATGGACGAAAACGTGGAAGAGCTAGCAGCGCTGGATGCAATCGACGGTGGAAAATTGTATAAAATGGGGACGATGGTGGACATCCCGGCGGCTGCAAATATGTTACGGTACTACGCGGGTGCAGCGGATAAAATCCAGGGGGAGGTGTTGAAAATGTCAAGGCCACTTCACGGGTACACGTTGATGGAGCCGATCGGAGTGGTGGGCCACATCATACCGTGGAACTTTCCGACGACGATGTTCTTCCTCAAAGTGGGGCCCTCCTTGGCCGCCGGTTGCACCATGCTCGTCAAACCGGCCGAGCAGACCCCTCTCTCCGCCCTTTTTTACGCCCATCTCGCAAAACTGGCTGGCATTCCAGATGGAGTATTGAACGTTGTGACTGGATTTGGAGCCACTGCCGGATCAGCCATTGCATCCCACATGGACATTGACAAGGTAAGTTTTACAGGATCAACCAAGGTTGGAAGGCTGATAATGAAAGCTGCAAGTGAAAGTAATCTTAAACAAGTGTCGTTGGAATTAGGAGGAAAATCGCCTGTTTTAATCTTCGATGATGCCGATGTTGATAAAGCTGCCGATCTTGCTCTTCTTGCCATTTTTTACAACAAGGGAGAGATTTGTGTGGCTGGATCCCGAGTATTGGTTCAAGAAGGGATTTACAACGAATTTGTGAAAAAGATTAGTGAAAAGGCCAAATCTTGGGTTGTAGGAGACCCTTTTGACCCCAAAGTTCAATATGGACCTCAGGTAGACAAAAGGCAATTGGAGAAAATTCTAATGTACATAGAACATGGCAAAAACGAAGGAGCCACATTGCTGACCGGCGGCAAACGTATAGGCGAAGTTGGGTATTACATAGAGCCAACCATCTTCACAGATGTCAAGGAAGACTCGTTGATCGCGCAAGACGAAATCTTCGGACCAGTCCTCTCCGTTATAAAATTTAAGACGATCGAAGAGGGAATAAAGATTGCGAACAACACAAAGTACGGGCTAGCAGCAGGAATAGTGACGAACAGCATAGACACAATGAATACGGTTTCGAGGTCGATTAGAGCCGGAACCATTTGGGTAAATTGTTACTTCGCATTCGACCCGAGCGCTCCGTTTGGAGGCTACAAGATGAGTGGTTTCGGTAGAGACTCGGGAATGCACGCTGTTCATAAGTATCTTCAAACCAAATCCGTGGTCACTCCGTTGGTTAATACTCCTTGGCTTTGA 1512 47.16 MDQNHCNGNSESNLNKIPKIKFTKLFINGQFVDSVSGKSFETIDPRTGEVITTVAAGDKEDVDLAVEAAREAFDHGRWPRMSGSERGKIMMKLADLMDENVEELAALDAIDGGKLYKMGTMVDIPAAANMLRYYAGAADKIQGEVLKMSRPLHGYTLMEPIGVVGHIIPWNFPTTMFFLKVGPSLAAGCTMLVKPAEQTPLSALFYAHLAKLAGIPDGVLNVVTGFGATAGSAIASHMDIDKVSFTGSTKVGRLIMKAASESNLKQVSLELGGKSPVLIFDDADVDKAADLALLAIFYNKGEICVAGSRVLVQEGIYNEFVKKISEKAKSWVVGDPFDPKVQYGPQVDKRQLEKILMYIEHGKNEGATLLTGGKRIGEVGYYIEPTIFTDVKEDSLIAQDEIFGPVLSVIKFKTIEEGIKIANNTKYGLAAGIVTNSIDTMNTVSRSIRAGTIWVNCYFAFDPSAPFGGYKMSGFGRDSGMHAVHKYLQTKSVVTPLVNTPWL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29840797 29848120 - Sed0003712.1 Sed12g1865 732821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1865 503 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 27 295 - -
Sed12g1865 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 297 308 IPR016160 GO:0016491(InterPro)
Sed12g1865 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 269 276 IPR029510 GO:0016491(InterPro)
Sed12g1865 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 27 491 IPR016162 GO:0016491(InterPro)
Sed12g1865 503 FunFam Aldehyde dehydrogenase, putative 465 491 - -
Sed12g1865 503 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 21 495 - GO:0004029(PANTHER)
Sed12g1865 503 SUPERFAMILY ALDH-like 17 499 IPR016161 GO:0016491(InterPro)
Sed12g1865 503 Pfam Aldehyde dehydrogenase family 31 493 IPR015590 GO:0016491(InterPro)
Sed12g1865 503 FunFam Aldehyde dehydrogenase3 273 462 - -
Sed12g1865 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 273 462 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g1685 Sed-Chr7:15029591 Sed12g1865 Sed-Chr12:29840797 1.90E-32 dispersed
Sed12g1865 Sed-Chr12:29840797 Sed12g1906 Sed-Chr12:30211078 5.40E-99 dispersed
Sed03g2695 Sed-Chr3:43232244 Sed12g1865 Sed-Chr12:29840797 5.50E-166 transposed
Sed05g3313 Sed-Chr5:42467690 Sed12g1865 Sed-Chr12:29840797 4.10E-92 transposed
Sed12g1882 Sed-Chr12:30009036 Sed12g1865 Sed-Chr12:29840797 3.70E-162 transposed
Sed12g1865 Sed-Chr12:29840797 Sed08g0748 Sed-Chr8:5615614 2.30E-254 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1865 K12355 - csv:101219029 849.351