Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1877 ATGGCGGCTCGAGGCGTCGATTTCAAGTGGTATGACGGGTTTTTCTTGTCGATGCTCGCGACTAGTGTAGTGATAGTTTCAATTAATTGGAAGAGGTATCATACTTGTGTACATCCCTTGCATAAATGGATTGTTGTTGACTACACTACTGTCTTTGTTTTTCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCCGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTTGCGCTTCTGCTATATCCATTTCTTTGGACTTGGACTGCTATTGGTACTTTATGGTACAGAGAGGCCCATGAATGTCTTCCCGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTACTCTTTAGCTACTGTGCCCTTGTATGCATTGCGTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTTTCGTTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCAGGGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACAAGGGTAATGGGCCAAGATGCTGCTACATACCATCCCCATCCTGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCATGTTAAAGGCAGTTCCAACAGATTGCAGCGAATGTCCTATCTGCTTAGAAGAGTTCCATGTAGGAAATGAGGTCCGTGGCCTCCCATGTGCTCATAATTTCCATGTGGGATGCATTGACGAGTGGCTTCGATTGAATGTGAAATGCCCTAGATGTCGCTGCTCGGTCTTCCCAAATCTTGACCTCAGTGCTTTGTCCAATCTCCGTTCCGAAACCGATCGACCTTCAGCAAGTGCTGTTACTACAGCCAATCATTATTTGAGATCTCATCCTCCAAGCCAAAGTTATCTGGTGAGATTGCAGGGTCCACTTCGACCGGTTCACACCGAAAATGCTGGAGCACATGGTGATATAGAGTCTGCTATTGCTTTGGAAGCTGCCGAGAATAGGTCTGCCCGAGACCAAACGATACCGGGACGGTCTCCCGTTAGACCCATGTTTGTGAATTCCACATCACAACTCTAG 1140 46.84 MAARGVDFKWYDGFFLSMLATSVVIVSINWKRYHTCVHPLHKWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLYPFLWTWTAIGTLWYREAHECLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALSFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAATYHPHPGLYLTPAQREAVEALIEELPKFMLKAVPTDCSECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSETDRPSASAVTTANHYLRSHPPSQSYLVRLQGPLRPVHTENAGAHGDIESAIALEAAENRSARDQTIPGRSPVRPMFVNSTSQL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 29989243 29995669 - Sed0017203.1 Sed12g1877 732833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1877 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 358 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Sed12g1877 379 Pfam Ring finger domain 236 278 IPR001841 -
Sed12g1877 379 SMART ring_2 237 277 IPR001841 -
Sed12g1877 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 283 IPR013083 -
Sed12g1877 379 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Sed12g1877 379 MobiDBLite consensus disorder prediction 354 379 - -
Sed12g1877 379 SUPERFAMILY RING/U-box 219 286 - -
Sed12g1877 379 FunFam E3 ubiquitin-protein ligase SIS3 205 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1661 Sed-Chr1:12077670 Sed12g1877 Sed-Chr12:29989243 1.10E-154 dispersed
Sed01g1662 Sed-Chr1:12077670 Sed12g1877 Sed-Chr12:29989243 1.00E-141 dispersed
Sed08g2501 Sed-Chr8:37819993 Sed12g1877 Sed-Chr12:29989243 6.80E-20 dispersed
Sed12g1877 Sed-Chr12:29989243 Sed12g1879 Sed-Chr12:29989930 3.80E-230 dispersed
Sed12g1877 Sed-Chr12:29989243 Sed12g1878 Sed-Chr12:29989243 3.80E-230 tandem
Sed12g1877 Sed-Chr12:29989243 Sed08g0132 Sed-Chr8:743362 9.50E-197 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1877 K16284 - csv:101208939 700.279