Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1881 ATGAAGGAGAACAGTGATGGATTCGTGCGAGCGGATCAGATTGATCTGAAGAGCTTGGACGAGCAGCTCGAGAGGCATCTCAACCGAGCCTTGACGATGGAGAAGAGCAAGAAGAAAGATGAAGACGGCAACAGCTTTCTCGCTTCCGCTGCCATGGCTCGCAGCAGGTCTACTAGAGTCGCTGCCAAGGAGCGGCTGGACTGGGAGATCGATCCTTCCAAACTCATAATCAAGACCGCCATTGCTCGCGGTACTTTCGGCACGGTTCATCGCGGCGTGTATGACGGACTGGATGTCGCCGTTAAGTTGCTGGATTGGGGAGAAGAAGGTCACAGAACAGAAGCTGAAATTGCTTCACTAAGGGCAGCTTTTAAGCAGGAAGTTGCTGTTTGGCATAAACTAGAGCATCCCAATGTTACTAAGTTTATAGGAGCAACAATGGGCTCAGCGGAGTTACAGATTCAAACTGAAAATGGTTTAATAGGCATGCCAAGTAACATATGTTGTGTTGTGGTGGAATATCTCGCCGGAGGTGCCCTTAAATCTTTTCTCATAAAGAACAGGAGAAGGAAGCTAGCTTTCAAGGTGGTTGTCCAGTTGGCACTTGATCTTGCTAGAGGGTTGAGTTACCTTCATTCACAGAAGATTGTTCACAGAGATGTAAAGACAGAAAACATGCTGTTGGATAAAACACGTACAGTCAAAATAGCCGATTTTGGCGTTGCTCGAGTTGAGGCCTCAAATCCCAATGACATGACTGGGGAGACCGGTACACTCGGTTACATGGCTCCTGAGGTTCTCAATGGAAACCCATATAACAGAAAGTGCGACGTGTACAGCTTCGGTATCTGCCTGTGGGAAACTTATTGCTGTGACATGCCATATCCCGATCTTAGTTTCTCTGAAGTGACTTCTGCTGTTGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAACGATGCTGGGATGCAACCCCGGACAAGCGGCCTGAGATGGACGAAGTAGTTACAATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAGCTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCCTAG 1137 48.02 MKENSDGFVRADQIDLKSLDEQLERHLNRALTMEKSKKKDEDGNSFLASAAMARSRSTRVAAKERLDWEIDPSKLIIKTAIARGTFGTVHRGVYDGLDVAVKLLDWGEEGHRTEAEIASLRAAFKQEVAVWHKLEHPNVTKFIGATMGSAELQIQTENGLIGMPSNICCVVVEYLAGGALKSFLIKNRRRKLAFKVVVQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVTMLEAIDTSKGGGMIPVDQAQGCLCFRKYRGP 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30004010 30007644 + Sed0016309.1 Sed12g1881 732837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1881 378 CDD STKc_MAP3K-like 81 349 - -
Sed12g1881 378 Gene3D Transferase(Phosphotransferase) domain 1 176 365 - -
Sed12g1881 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 FunFam Kinase suppressor of Ras 1 64 159 - -
Sed12g1881 378 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 54 350 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Sed12g1881 378 Coils Coil 16 36 - -
Sed12g1881 378 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 Pfam Protein tyrosine and serine/threonine kinase 77 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 SUPERFAMILY Protein kinase-like (PK-like) 62 349 IPR011009 -
Sed12g1881 378 PRINTS Tyrosine kinase catalytic domain signature 320 342 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 PRINTS Tyrosine kinase catalytic domain signature 276 298 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 PRINTS Tyrosine kinase catalytic domain signature 172 185 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 PRINTS Tyrosine kinase catalytic domain signature 210 228 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 SMART serkin_6 75 352 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1881 378 Gene3D Phosphorylase Kinase; domain 1 64 158 - -
Sed12g1881 378 FunFam Serine/threonine-protein kinase HT1 175 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g0951 Sed-Chr12:5923623 Sed12g1881 Sed-Chr12:30004010 7.20E-144 dispersed
Sed12g0952 Sed-Chr12:5923623 Sed12g1881 Sed-Chr12:30004010 7.20E-144 dispersed
Sed12g1881 Sed-Chr12:30004010 Sed14g1459 Sed-Chr14:23070659 2.20E-52 dispersed
Sed06g0557 Sed-Chr6:4870613 Sed12g1881 Sed-Chr12:30004010 1.00E-187 transposed
Sed12g1881 Sed-Chr12:30004010 Sed08g0135 Sed-Chr8:772472 1.80E-211 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80018 PF07714 PK_Tyr_Ser-Thr 5.20E-62 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1881 - - - 0.0