Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1882 ATGGCTGCTCGTAGAGGAATCTGTTCTTTAATTTCTCGCCCTTTCTTATCTTCTTCTTCTTCTTCTGGTTATGTTCTTCCATCTCATGGAAGAGTTTCAAGGTTCCATGGAAGAGGGAATTGGTTCAGCACCTCTGCTTTGGCAGAGGAGGAACTTGTCACTCCTCCTGTTCAGATAAGTTACACTCAGAATTTGATTAATGGGCAGTTTGTAGATGCTGCATCAGGTAAAACATTTCCGACCTACGATCCTCGCACTGGGGAAGTGATTGCTCAAGTTGCCGAGGGCGAGGCTGAAGATATCAACCGTGCAGTATCGGCAGCTCGCAAGGCTTTTGACGAGGGGCCATGGCCGAAAATGTCGGCTTATGAACGATCGAGGATATTACTACGGTTTGCAGATTTGGTTGAGAAACATAGCACTGAACTTGCAGCATTAGAAACATGGAACAATGGGAAACCTTATGAACAATCGGCTAAAACCGAAATACCAACACTTGCGCGCTTGTTTCACTATTATGCCGGCTGGGCAGACAAAATCCATGGCTTAACAGTTCCAGCTGATGGGAAATATCATGTGCAAACATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGCCCTGCTCTTGCCTGTGGCAACACCATTGTCTTAAAGACTGCAGAGCAAACACCACTCACTGCCCTTTATGCCGCCAAGTTATTTCACGAGGCTGGTCTGCCTCCCGGTGTTCTGAACATCGTTTCAGGCTATGGACCAACGGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCTTTCACCGGATCGACAAGTACAGGAAAAGTTGTGCTTCAATTGGCAGCTCAGAGCAATTTGAAGCCAGTAACACTAGAACTTGGAGGTAAATCACCTTTCATCGTTTTTGAGGATGCAAATGTCGATAGTGCCGTGGAACTTGCTCATTTTGCTCTTTTCTTCAATCAGGGGCAATGTTGCTGTGCCGGATCTCGTACTTTTGTCCATGAGCGTGTATACGACGAGTTCGTGGAGAAATCGAGGGCACGTGCCCAAAGACGTGTTGTTGGTGACCCTTTCAAGAAGGATGTTGAACAGGGCCCTCAGATTGACTCGGAGCAGTTCGAAAAAATCCTGAGATACATAAAATCTGGCATTGAAAGTGATGCAACTTTAGAATGTGGAGGTGATAGACTTGGGTCCAAGGGATACTTTATTCAGCCAACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCAAAGGATGAGATCTTCGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGATGAAGTAATTCAAAGGGCAAACACATCGCGTTACGGTCTAGCTGCCGGAGTTTTCACATCGAACATCGACACAGCCAACACACTCACACGAGGATTGAGAACAGGGACCGTGTGGGTCAATTGCTTCGACGTATTTGACGCTGCAATACCGTTTGGCGGGTATAAGATGAGCGGAATGGGGAGGGAGAAGGGAATTTACAGCTTACAAAACTACTTGCAGGTGAAGGCTGTGGTTACACCTTTGAAGAATCCAGCATGGTTGTGA 1629 46.16 MAARRGICSLISRPFLSSSSSSGYVLPSHGRVSRFHGRGNWFSTSALAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAQVAEGEAEDINRAVSAARKAFDEGPWPKMSAYERSRILLRFADLVEKHSTELAALETWNNGKPYEQSAKTEIPTLARLFHYYAGWADKIHGLTVPADGKYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYAAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTSTGKVVLQLAAQSNLKPVTLELGGKSPFIVFEDANVDSAVELAHFALFFNQGQCCCAGSRTFVHERVYDEFVEKSRARAQRRVVGDPFKKDVEQGPQIDSEQFEKILRYIKSGIESDATLECGGDRLGSKGYFIQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANTSRYGLAAGVFTSNIDTANTLTRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30009036 30012851 - Sed0023744.1 Sed12g1882 732838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1882 542 Pfam Aldehyde dehydrogenase family 70 532 IPR015590 GO:0016491(InterPro)
Sed12g1882 542 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 66 347 - -
Sed12g1882 542 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 336 347 IPR016160 GO:0016491(InterPro)
Sed12g1882 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 66 530 IPR016162 GO:0016491(InterPro)
Sed12g1882 542 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 61 534 - GO:0004029(PANTHER)
Sed12g1882 542 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 308 315 IPR029510 GO:0016491(InterPro)
Sed12g1882 542 FunFam Mitochondrial aldehyde dehydrogenase 2 314 503 - -
Sed12g1882 542 CDD ALDH_F2BC 59 534 - -
Sed12g1882 542 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620(InterPro)
Sed12g1882 542 SUPERFAMILY ALDH-like 58 536 IPR016161 GO:0016491(InterPro)
Sed12g1882 542 FunFam Aldehyde dehydrogenase, putative 504 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2695 Sed-Chr3:43232244 Sed12g1882 Sed-Chr12:30009036 8.00E-250 dispersed
Sed08g0168 Sed-Chr8:923304 Sed12g1882 Sed-Chr12:30009036 2.20E-100 dispersed
Sed08g0748 Sed-Chr8:5615614 Sed12g1882 Sed-Chr12:30009036 4.70E-156 dispersed
Sed12g1882 Sed-Chr12:30009036 Sed12g1906 Sed-Chr12:30211078 3.40E-99 dispersed
Sed12g1882 Sed-Chr12:30009036 Sed12g1865 Sed-Chr12:29840797 3.70E-162 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1882 K00128 - csv:101209430 973.0