Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1884 | ATGCTGTCAAGTTCTTGCTTGAGCTTGTTAGAATTATCATCAGTGGATATGTTGGATTTTCCACCTACACCGAAAACTGTTCCACGGGTAATGACTGCTTCGGGTATATTTTCCGATAAGGACACTGATTTGGAAGTTTCCTCGTCTAAATGTCGAGGGAGAAAAATAATAGTGGCAAATTTTCTCCCTATTCATGCTAAAAAGGATCCAGATTCTGGGAGATGGAGCTTTAGTTTTGATGAGGATTCACTTCTTCTTCAGTTGAAGGATGGATTCCCATCGGATGTGGATGTTATATATGTTGGATCGTTAAAGGTTGATGTTGATGTCCGAGAGCAGGAAGAGATTTCGCAGAAATTATTGGAGGAATTCAACTGTGCTCCAACTTTCATCCCGTCATCCCTACATAAACAGTTTTATCATGGATTCTGCAAACAACATCTGTGGCCACTTTTTCATTACATGATGCCAATATCTCCTTATCATGGAACTCGCTTTGATCGACGTCTTTGGCAAGCGTATCTTTCAGCCAATAAAAGGTTTGCAGATAAAGTTATGGAGGTAGTCAATCTGGAAGAAGATTATGTCTGGATTCATGACTACCATCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGGTTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTACCGAACTCTACCTGTCAGAGATGAGATTCTGAAAGCATTACTTAACGCAGACCTAATCGGATTCCATACGTTCGACTACGCTCGCCACTTCCTATCTTGTTGTAGTAGGTTGCTTGGTCTGGAGTATGAATCTAAACGAGGCTATCTCACGCTCGAGTATTTTGGCCGTACCATTTACATTAAGATTATGCCCGTTGGAATTCATATGGGACGACTTGAATTTGCATTAAACCAACCTGAAACTTCAGTCAAGGTCAAGGAAATCAAAGAGAATCTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTGTAGAACAGCTCTTGAACCAGCATCCAGAGTTACAAGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGTGATGGGAATGACGTCCTGGAGACAAAAAGGGAAACTTATGAGATAACCGAAAGGATTAACAATGCTTTCGGTTTTCCAGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTGGCAGAGTGTTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAATTCCATATGAGTATATTGTTTGTCGACAGGGAACTTCGCAAATGAATGAAGTCTTGGAAGTCTCCCCAAATACACCTCAGACTAGCACGATTGTTGTGTCGGAATTCATTGGTTGTTCACCATCTCTAAGCGGTGCAGTCAGGGTAAATCCATGGGATTTTGATGCTGTAGCCGATGCACTTTATTCGGCTTTAGCAATGCCTGCATTAGAGAAGCAACTGAGGCATGAAAAGCATTACCGATATATTAGCTCTCATGATGTTGCTTACTGGGCTCGCAGTTTCATGCAAGATTTGGAGCGAGCCTGCAAAGATCACTACAGTAAACGTTGTTGGGGCATTGGACTTGGCTTAGGTTTCAGAATCTTGTCACTTTCTCCAAGTTTCAGAAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGCTCTTCTAGGAGGGCAATATTTTTGGACTACGACGGGACCGTTGTTTCCCAAGCTTCATTGGTCAAATCCCCGACACCTGAAGTCATTTCTATCCTCAACAACCTTTGCATGGATTCAAAGAACACCGTGTTTATAGTTAGTGGCAGGGGGAAAGTTTCTCTCGGTTCATGGTTCGATTCATGTAAGAATCTCGGTATTGCTGCTGAACATGGATACTACTTGAGGTGGAATAGGGATTCAGACTGGGAAGTTAGTACATTAGCTGAAAACTTTGGCTGGAAAAGGATCGCAGAACCTGTGATGAAACTATATACTGAGGCAACTGATGGCTCTTCCATAGAGCCAAAGGACAGCGCCTTGGTCTGGCACCATCAAGACGCAGATTCGTATTTTGGTTCATGTCAGGCCATGGAGTTGTTAGATCACCTTGAAAACGTCCTCGCTAATGAACCTGTAGTCGTTAAAAAAGGCCAGCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGACTAGTTGCTGAAAGGGTCCTTTCCACAATGATCGGATCTGATAAAGCACCCGACTTTGTAATGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATTGAAAAGAACCTATAGCTCATCCCTTTCTACTACTCCTCCAAAGATATTTGCCTGTACTGTGGGTCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGACACTGCCGATGTTTTGACCTTACTCAAAAGCCTGGCCACCTCCACTGGCTTTAAATCAAGGTCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGTTTGA | 2571 | 42.12 | MLSSSCLSLLELSSVDMLDFPPTPKTVPRVMTASGIFSDKDTDLEVSSSKCRGRKIIVANFLPIHAKKDPDSGRWSFSFDEDSLLLQLKDGFPSDVDVIYVGSLKVDVDVREQEEISQKLLEEFNCAPTFIPSSLHKQFYHGFCKQHLWPLFHYMMPISPYHGTRFDRRLWQAYLSANKRFADKVMEVVNLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKIMPVGIHMGRLEFALNQPETSVKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAVEQLLNQHPELQGNVVLVQILNPARSDGNDVLETKRETYEITERINNAFGFPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLIPYEYIVCRQGTSQMNEVLEVSPNTPQTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYSALAMPALEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSSSRRAIFLDYDGTVVSQASLVKSPTPEVISILNNLCMDSKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHQDADSYFGSCQAMELLDHLENVLANEPVVVKKGQQIVEVKPQGVTKGLVAERVLSTMIGSDKAPDFVMCIGDDRSDEDMFESILKRTYSSSLSTTPPKIFACTVGQKPSKAKYYLDDTADVLTLLKSLATSTGFKSRSSFETRVLFEDDV | 856 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 30061443 | 30064214 | + | Sed0021436.1 | Sed12g1884 | 732840 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1884 | 856 | Pfam | Glycosyltransferase family 20 | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed12g1884 | 856 | FunFam | Trehalose-6-phosphate synthase 2 | 669 | 748 | - | - | |
Sed12g1884 | 856 | FunFam | Alpha,alpha-trehalose-phosphate synthase | 308 | 523 | - | - | |
Sed12g1884 | 856 | NCBIfam | HAD-IIB family hydrolase | 587 | 788 | IPR006379 | - | |
Sed12g1884 | 856 | FunFam | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 715 | 847 | - | - | |
Sed12g1884 | 856 | CDD | GT20_TPS | 54 | 539 | IPR001830 | GO:0003824(InterPro)|GO:0005992(InterPro) | |
Sed12g1884 | 856 | SUPERFAMILY | HAD-like | 586 | 835 | IPR036412 | - | |
Sed12g1884 | 856 | Gene3D | Glycogen Phosphorylase B; | 307 | 523 | - | - | |
Sed12g1884 | 856 | Pfam | Trehalose-phosphatase | 589 | 824 | IPR003337 | GO:0005992(InterPro) | |
Sed12g1884 | 856 | NCBIfam | trehalose-phosphatase | 584 | 835 | IPR003337 | GO:0005992(InterPro) | |
Sed12g1884 | 856 | CDD | HAD_TPP | 587 | 827 | - | - | |
Sed12g1884 | 856 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 24 | 836 | IPR001830 | GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER) | |
Sed12g1884 | 856 | Gene3D | - | 585 | 691 | IPR023214 | - | |
Sed12g1884 | 856 | Gene3D | - | 714 | 846 | IPR023214 | - | |
Sed12g1884 | 856 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 54 | 543 | - | - | |
Sed12g1884 | 856 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 47 | 306 | - | - | |
Sed12g1884 | 856 | Gene3D | Glycogen Phosphorylase B; | 47 | 306 | - | - | |
Sed12g1884 | 856 | FunFam | alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 | 585 | 702 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g1884 | Sed-Chr12:30061443 | Sed14g1527 | Sed-Chr14:23539662 | 0.00E+00 | dispersed | |
Sed12g1884 | Sed-Chr12:30061443 | Sed04g0641 | Sed-Chr4:4978685 | 0.00E+00 | wgd | |
Sed12g1884 | Sed-Chr12:30061443 | Sed08g0139 | Sed-Chr8:799337 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1884 | K16055 | - | csv:101209676 | 1573.53 |