Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1884 ATGCTGTCAAGTTCTTGCTTGAGCTTGTTAGAATTATCATCAGTGGATATGTTGGATTTTCCACCTACACCGAAAACTGTTCCACGGGTAATGACTGCTTCGGGTATATTTTCCGATAAGGACACTGATTTGGAAGTTTCCTCGTCTAAATGTCGAGGGAGAAAAATAATAGTGGCAAATTTTCTCCCTATTCATGCTAAAAAGGATCCAGATTCTGGGAGATGGAGCTTTAGTTTTGATGAGGATTCACTTCTTCTTCAGTTGAAGGATGGATTCCCATCGGATGTGGATGTTATATATGTTGGATCGTTAAAGGTTGATGTTGATGTCCGAGAGCAGGAAGAGATTTCGCAGAAATTATTGGAGGAATTCAACTGTGCTCCAACTTTCATCCCGTCATCCCTACATAAACAGTTTTATCATGGATTCTGCAAACAACATCTGTGGCCACTTTTTCATTACATGATGCCAATATCTCCTTATCATGGAACTCGCTTTGATCGACGTCTTTGGCAAGCGTATCTTTCAGCCAATAAAAGGTTTGCAGATAAAGTTATGGAGGTAGTCAATCTGGAAGAAGATTATGTCTGGATTCATGACTACCATCTTATGGTTCTCCCTACTTTTTTGAGAAAACGTTACAGTCGAATTAAGCTCGGGTTCTTCCTTCATAGTCTGTTTCCCTCATCAGAAATCTACCGAACTCTACCTGTCAGAGATGAGATTCTGAAAGCATTACTTAACGCAGACCTAATCGGATTCCATACGTTCGACTACGCTCGCCACTTCCTATCTTGTTGTAGTAGGTTGCTTGGTCTGGAGTATGAATCTAAACGAGGCTATCTCACGCTCGAGTATTTTGGCCGTACCATTTACATTAAGATTATGCCCGTTGGAATTCATATGGGACGACTTGAATTTGCATTAAACCAACCTGAAACTTCAGTCAAGGTCAAGGAAATCAAAGAGAATCTCAAAGGAAAGAAGCTTATTCTTGGTGTTGATGATATGGACATATTTAAAGGTATTGGTCTGAAGTTATTAGCTGTAGAACAGCTCTTGAACCAGCATCCAGAGTTACAAGGCAATGTTGTTCTGGTGCAAATTCTAAATCCGGCACGGAGTGATGGGAATGACGTCCTGGAGACAAAAAGGGAAACTTATGAGATAACCGAAAGGATTAACAATGCTTTCGGTTTTCCAGGATATGAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTATGTATTGGCAGAGTGTTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAATTCCATATGAGTATATTGTTTGTCGACAGGGAACTTCGCAAATGAATGAAGTCTTGGAAGTCTCCCCAAATACACCTCAGACTAGCACGATTGTTGTGTCGGAATTCATTGGTTGTTCACCATCTCTAAGCGGTGCAGTCAGGGTAAATCCATGGGATTTTGATGCTGTAGCCGATGCACTTTATTCGGCTTTAGCAATGCCTGCATTAGAGAAGCAACTGAGGCATGAAAAGCATTACCGATATATTAGCTCTCATGATGTTGCTTACTGGGCTCGCAGTTTCATGCAAGATTTGGAGCGAGCCTGCAAAGATCACTACAGTAAACGTTGTTGGGGCATTGGACTTGGCTTAGGTTTCAGAATCTTGTCACTTTCTCCAAGTTTCAGAAAGCTTTCCATTGAACATATTGGCTCTGCATATAGGAGCTCTTCTAGGAGGGCAATATTTTTGGACTACGACGGGACCGTTGTTTCCCAAGCTTCATTGGTCAAATCCCCGACACCTGAAGTCATTTCTATCCTCAACAACCTTTGCATGGATTCAAAGAACACCGTGTTTATAGTTAGTGGCAGGGGGAAAGTTTCTCTCGGTTCATGGTTCGATTCATGTAAGAATCTCGGTATTGCTGCTGAACATGGATACTACTTGAGGTGGAATAGGGATTCAGACTGGGAAGTTAGTACATTAGCTGAAAACTTTGGCTGGAAAAGGATCGCAGAACCTGTGATGAAACTATATACTGAGGCAACTGATGGCTCTTCCATAGAGCCAAAGGACAGCGCCTTGGTCTGGCACCATCAAGACGCAGATTCGTATTTTGGTTCATGTCAGGCCATGGAGTTGTTAGATCACCTTGAAAACGTCCTCGCTAATGAACCTGTAGTCGTTAAAAAAGGCCAGCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGACTAGTTGCTGAAAGGGTCCTTTCCACAATGATCGGATCTGATAAAGCACCCGACTTTGTAATGTGCATTGGAGATGATCGATCCGACGAAGACATGTTCGAGAGCATATTGAAAAGAACCTATAGCTCATCCCTTTCTACTACTCCTCCAAAGATATTTGCCTGTACTGTGGGTCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGACACTGCCGATGTTTTGACCTTACTCAAAAGCCTGGCCACCTCCACTGGCTTTAAATCAAGGTCAAGTTTTGAAACTCGTGTTTTGTTCGAGGATGATGTTTGA 2571 42.12 MLSSSCLSLLELSSVDMLDFPPTPKTVPRVMTASGIFSDKDTDLEVSSSKCRGRKIIVANFLPIHAKKDPDSGRWSFSFDEDSLLLQLKDGFPSDVDVIYVGSLKVDVDVREQEEISQKLLEEFNCAPTFIPSSLHKQFYHGFCKQHLWPLFHYMMPISPYHGTRFDRRLWQAYLSANKRFADKVMEVVNLEEDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSLFPSSEIYRTLPVRDEILKALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKIMPVGIHMGRLEFALNQPETSVKVKEIKENLKGKKLILGVDDMDIFKGIGLKLLAVEQLLNQHPELQGNVVLVQILNPARSDGNDVLETKRETYEITERINNAFGFPGYEPVILIDHPIPPHEKIAYYVLAECCIVNALRDGMNLIPYEYIVCRQGTSQMNEVLEVSPNTPQTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYSALAMPALEKQLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYSKRCWGIGLGLGFRILSLSPSFRKLSIEHIGSAYRSSSRRAIFLDYDGTVVSQASLVKSPTPEVISILNNLCMDSKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSTLAENFGWKRIAEPVMKLYTEATDGSSIEPKDSALVWHHQDADSYFGSCQAMELLDHLENVLANEPVVVKKGQQIVEVKPQGVTKGLVAERVLSTMIGSDKAPDFVMCIGDDRSDEDMFESILKRTYSSSLSTTPPKIFACTVGQKPSKAKYYLDDTADVLTLLKSLATSTGFKSRSSFETRVLFEDDV 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30061443 30064214 + Sed0021436.1 Sed12g1884 732840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1884 856 Pfam Glycosyltransferase family 20 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed12g1884 856 FunFam Trehalose-6-phosphate synthase 2 669 748 - -
Sed12g1884 856 FunFam Alpha,alpha-trehalose-phosphate synthase 308 523 - -
Sed12g1884 856 NCBIfam HAD-IIB family hydrolase 587 788 IPR006379 -
Sed12g1884 856 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 715 847 - -
Sed12g1884 856 CDD GT20_TPS 54 539 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Sed12g1884 856 SUPERFAMILY HAD-like 586 835 IPR036412 -
Sed12g1884 856 Gene3D Glycogen Phosphorylase B; 307 523 - -
Sed12g1884 856 Pfam Trehalose-phosphatase 589 824 IPR003337 GO:0005992(InterPro)
Sed12g1884 856 NCBIfam trehalose-phosphatase 584 835 IPR003337 GO:0005992(InterPro)
Sed12g1884 856 CDD HAD_TPP 587 827 - -
Sed12g1884 856 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 24 836 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Sed12g1884 856 Gene3D - 585 691 IPR023214 -
Sed12g1884 856 Gene3D - 714 846 IPR023214 -
Sed12g1884 856 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 54 543 - -
Sed12g1884 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 47 306 - -
Sed12g1884 856 Gene3D Glycogen Phosphorylase B; 47 306 - -
Sed12g1884 856 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 585 702 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1884 Sed-Chr12:30061443 Sed14g1527 Sed-Chr14:23539662 0.00E+00 dispersed
Sed12g1884 Sed-Chr12:30061443 Sed04g0641 Sed-Chr4:4978685 0.00E+00 wgd
Sed12g1884 Sed-Chr12:30061443 Sed08g0139 Sed-Chr8:799337 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1884 K16055 - csv:101209676 1573.53