Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1899 ATGTCGTCGCAGAAAAGAAACCCTGATGATGGAGATGCTCCGGCGGATGGTGACAATCCCGATGATAAGCGTAGGAAGTTTAGTTTCTTTAGTGTGGTTCAAGATGCATGGTTTTTGCAATCAATGCAACAGACGTTGGAACCACTCATTCGTAAAGTGGTAAAGGAGGAGGTTGAATCGGCACTAAGAAAGCACATCACCAATGTGCAAAGGAATGATGAGAAGCATGGGAAAAAAATCTATTCTTCCGGGCCAAGATGCTTTCAATTGAAGTTTATAACCGACATGTCTCTCCCGGTATTCACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGACGGTGGCTTTGATTGACACCCTATGTGGGGAAGTTGTTGACACTGGGCCTCAATCCTCTGCGAAAGTGGAAGTTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAGGCGATAATTACACTATAGAGGAGTTTAGCAATAACATTGTAAGAGAGAGGGAAGGAAAGAAATCACTTCTTACTGGAGATACATTTGTGAGCCTCAAAGATGGCATTGGTTCTGTAGGTGAAATTTCTTTCACTGATAATTCAAGCTGGACTAGAAGCCGGCGGTTCAGACTGGGTGCAAGAATTGTAGGTGACGATAATGGAACTAGAGTACTAGAAGCAAAGACTGCATCATTTGTGGTCAGAGATCACCGTGGAGAATTGTACAAGAAGCACCACCCTCCATCTCTGCAAGATGAAGTATGGAGATTGCAGAAAATTAGCAAAGATGGAGCCTATCACAAGCGCCTGAGCCAAGAAAAAATCAAGACGGTGCAAGATTTCCTTAGACATGTTTATTTACAACCTTCACGGCTTCGTAATGTTCTTGGTGGTATGTCTACCAAAATGTGGGAAGCTACAATTGAGCATGCACAGACATGTGTGCTTAACAACAAGATTTATATGTACAAACCTCGTGATTTGGAACCGAAAAGAGGTGTGGTCTTTAATGTTGTAGGACAAGTGATGGGTCTACATTCAGATCAGTACGTTCCCTTAGATAAGCTATCAGAAACTGAGAAGGCTGATGCTCACAACTTGGTTATCTCCGCATATGAACACTGGGAAGAAGTCGAATCTATTGATGATGAAACTTCTCTTGTAGGCGGCCCTTCTTACCCTGTCAGTTTCCTATACACCCCGAACTCACCAATGGAGGATCATTCTTATGGTAGTAAGTATTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTTACACCATCCAGTCCCTACCCTTCTGACATAATTTCGTCGCTGGGTTCTATTGGGAGTGCGAGTGGCTTGGTGGAGGATCATACTTTGCAGGGTTTCGATTCTATGGTGGTAAGGTACGACCCATTTCCAAGTTCCCCAAACTTTGGCAGCTCTTCTCTGATCTTCGATTCTGAGCCACTAAATTCATCTTTCTGCGATGTGGACCATCTGCAAGTTTTAGAGTCCGATTTGCATCGTAGCTCGATTTTAGAATCACAAGCTACTCTTATAAGTCGGTCCTCGTCATGTGTTGCTCAAACTAGATGGACTAAGGTATATGGTGTGCTACAATGGTACTTTTTGTTTATTAGGAGAAACAAACGCAGATTCGAGATATATAAAGGTGGTTGTGGAAAGGAAAAGCTGAACTATGGTTAA 1680 43.1 MSSQKRNPDDGDAPADGDNPDDKRRKFSFFSVVQDAWFLQSMQQTLEPLIRKVVKEEVESALRKHITNVQRNDEKHGKKIYSSGPRCFQLKFITDMSLPVFTGARIEGRDGSNLTVALIDTLCGEVVDTGPQSSAKVEVVVLEGDFEGGGDNYTIEEFSNNIVREREGKKSLLTGDTFVSLKDGIGSVGEISFTDNSSWTRSRRFRLGARIVGDDNGTRVLEAKTASFVVRDHRGELYKKHHPPSLQDEVWRLQKISKDGAYHKRLSQEKIKTVQDFLRHVYLQPSRLRNVLGGMSTKMWEATIEHAQTCVLNNKIYMYKPRDLEPKRGVVFNVVGQVMGLHSDQYVPLDKLSETEKADAHNLVISAYEHWEEVESIDDETSLVGGPSYPVSFLYTPNSPMEDHSYGSKYLASPKFSGFDFTPSSPYPSDIISSLGSIGSASGLVEDHTLQGFDSMVVRYDPFPSSPNFGSSSLIFDSEPLNSSFCDVDHLQVLESDLHRSSILESQATLISRSSSCVAQTRWTKVYGVLQWYFLFIRRNKRRFEIYKGGCGKEKLNYG 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30164682 30176180 - Sed0021292.1 Sed12g1899 732855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1899 559 Pfam Calmodulin binding protein-like N-terminal domain 88 233 IPR046831 -
Sed12g1899 559 MobiDBLite consensus disorder prediction 9 23 - -
Sed12g1899 559 MobiDBLite consensus disorder prediction 1 23 - -
Sed12g1899 559 PANTHER OS02G0177800 PROTEIN 23 540 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
Sed12g1899 559 Pfam Calmodulin binding protein C-terminal domain 315 377 IPR046829 -
Sed12g1899 559 Pfam Calmodulin binding protein central domain 246 310 IPR046830 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0163 Sed-Chr8:889092 Sed12g1899 Sed-Chr12:30164682 3.00E-230 dispersed
Sed08g0164 Sed-Chr8:889092 Sed12g1899 Sed-Chr12:30164682 3.30E-215 dispersed
Sed08g0508 Sed-Chr8:3327510 Sed12g1899 Sed-Chr12:30164682 6.90E-91 dispersed
Sed08g0509 Sed-Chr8:3327510 Sed12g1899 Sed-Chr12:30164682 6.90E-91 dispersed
Sed08g2190 Sed-Chr8:35799514 Sed12g1899 Sed-Chr12:30164682 1.20E-73 dispersed
Sed08g2191 Sed-Chr8:35799514 Sed12g1899 Sed-Chr12:30164682 1.20E-66 dispersed
Sed11g0398 Sed-Chr11:3814075 Sed12g1899 Sed-Chr12:30164682 3.80E-54 dispersed
Sed12g1899 Sed-Chr12:30164682 Sed12g2225 Sed-Chr12:32641582 2.60E-09 dispersed
Sed12g1899 Sed-Chr12:30164682 Sed12g1900 Sed-Chr12:30164682 2.00E-288 tandem
Sed12g1899 Sed-Chr12:30164682 Sed08g0162 Sed-Chr8:889092 1.40E-228 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1899 - - - 0.0