Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1900 ATGTGCAAAGTGGTGCTGATGAAATATCATGCATTTATGTTAAGGAATGATGAGAAGCATGGGAAAAAAATCTATTCTTCCGGGCCAAGATGCTTTCAATTGAAGTTTATAACCGACATGTCTCTCCCGGTATTCACTGGAGCTCGCATTGAAGGAAGAGATGGTTCCAACTTGACGGTGGCTTTGATTGACACCCTATGTGGGGAAGTTGTTGACACTGGGCCTCAATCCTCTGCGAAAGTGGAAGTTGTAGTGCTCGAGGGTGATTTTGAGGGTGGAGGCGATAATTACACTATAGAGGAGTTTAGCAATAACATTGTAAGAGAGAGGGAAGGAAAGAAATCACTTCTTACTGGAGATACATTTGTGAGCCTCAAAGATGGCATTGGTTCTGTAGGTGAAATTTCTTTCACTGATAATTCAAGCTGGACTAGAAGCCGGCGGTTCAGACTGGGTGCAAGAATTGTAGGTGACGATAATGGAACTAGAGTACTAGAAGCAAAGACTGCATCATTTGTGGTCAGAGATCACCGTGGAGAATTGTACAAGAAGCACCACCCTCCATCTCTGCAAGATGAAGTATGGAGATTGCAGAAAATTAGCAAAGATGGAGCCTATCACAAGCGCCTGAGCCAAGAAAAAATCAAGACGGTGCAAGATTTCCTTAGACATGTTTATTTACAACCTTCACGGCTTCGTAATGTTCTTGGTGGTATGTCTACCAAAATGTGGGAAGCTACAATTGAGCATGCACAGACATGTGTGCTTAACAACAAGATTTATATGTACAAACCTCGTGATTTGGAACCGAAAAGAGGTGTGGTCTTTAATGTTGTAGGACAAGTGATGGGTCTACATTCAGATCAGTACGTTCCCTTAGATAAGCTATCAGAAACTGAGAAGGCTGATGCTCACAACTTGGTTATCTCCGCATATGAACACTGGGAAGAAGTCGAATCTATTGATGATGAAACTTCTCTTGTAGGCGGCCCTTCTTACCCTGTCAGTTTCCTATACACCCCGAACTCACCAATGGAGGATCATTCTTATGGTAGTAAGTATTTGGCTTCTCCAAAATTTAGTGGCTTTGATTTTACACCATCCAGTCCCTACCCTTCTGACATAATTTCGTCGCTGGGTTCTATTGGGAGTGCGAGTGGCTTGGTGGAGGATCATACTTTGCAGGGTTTCGATTCTATGGTGGTAAGGTACGACCCATTTCCAAGTTCCCCAAACTTTGGCAGCTCTTCTCTGATCTTCGATTCTGAGCCACTAAATTCATCTTTCTGCGATGTGGACCATCTGCAAGTTTTAGAGTCCGATTTGCATCGTAGCTCGATTTTAGAATCACAAGCTACTCTTATAAGTCGGTCCTCGTCATGTGTTGCTCAAACTAGATGGACTAAGGTATATGGTGTGCTACAATGGTACTTTTTGTTTATTAGGAGAAACAAACGCAGATTCGAGATATATAAAGGTGGTTGTGGAAAGGAAAAGCTGAACTATGGTTAA 1512 42.59 MCKVVLMKYHAFMLRNDEKHGKKIYSSGPRCFQLKFITDMSLPVFTGARIEGRDGSNLTVALIDTLCGEVVDTGPQSSAKVEVVVLEGDFEGGGDNYTIEEFSNNIVREREGKKSLLTGDTFVSLKDGIGSVGEISFTDNSSWTRSRRFRLGARIVGDDNGTRVLEAKTASFVVRDHRGELYKKHHPPSLQDEVWRLQKISKDGAYHKRLSQEKIKTVQDFLRHVYLQPSRLRNVLGGMSTKMWEATIEHAQTCVLNNKIYMYKPRDLEPKRGVVFNVVGQVMGLHSDQYVPLDKLSETEKADAHNLVISAYEHWEEVESIDDETSLVGGPSYPVSFLYTPNSPMEDHSYGSKYLASPKFSGFDFTPSSPYPSDIISSLGSIGSASGLVEDHTLQGFDSMVVRYDPFPSSPNFGSSSLIFDSEPLNSSFCDVDHLQVLESDLHRSSILESQATLISRSSSCVAQTRWTKVYGVLQWYFLFIRRNKRRFEIYKGGCGKEKLNYG 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30164682 30176180 - Sed0021292.2 Sed12g1900 732856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1900 503 Pfam Calmodulin binding protein C-terminal domain 259 321 IPR046829 -
Sed12g1900 503 Pfam Calmodulin binding protein central domain 190 254 IPR046830 -
Sed12g1900 503 Pfam Calmodulin binding protein-like N-terminal domain 32 177 IPR046831 -
Sed12g1900 503 PANTHER OS02G0177800 PROTEIN 23 484 IPR012416 GO:0003700(PANTHER)|GO:0005516(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0080142(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2225 Sed-Chr12:32641582 Sed12g1900 Sed-Chr12:30164682 7.80E-06 dispersed
Sed12g1899 Sed-Chr12:30164682 Sed12g1900 Sed-Chr12:30164682 2.00E-288 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1900 - - - 0.0