Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed12g1902 | ATGTTTTTTCCATCTACAATTGATGTTTTCTCCATGCAATTTGCGACTCGCGATCTCGTCGCGATCGCCGGCGGACCGTCCTACGCCGTCCGATTAGGTCGAAAAGACGGATTCGTCTCCAGATCTAACAACAGCATTCCAGATCTGAATCAATCGATCGACAAATCGATCAGCCTGTTCGAATCGAAAGGATTCACTATCCGAGAAACGGTGGCGCTGTACGGCGGACGAACGATCGGATTCTCGAATTGCAGGGAGATCAGCGGCCGGATCTTCAATTTCAGCGAATCGACGCCGACGGATCCGGAGATGAATCCGAGATTTGCAGAGGCGTTGAGGAAGGCCTGCGGCGGGTATGAGAAGAATCCGGGAATGTCGGCGTATAGCGACGCCGTGACGCCGGTGAAGTTCGACAACCAGTATTACCGGAATCTGCTGAGAGGAATGGGGCTTTCGGTCTCCGATCACGCTCTGGTGAAGGATCCGAGGACGAGGAAGTTTGTGGAGATGTACGCCGGAGATCAGGCGTTGTTCTTCAGGGACTTTGCTCATGCGATGGAGAAGATGAGTGTTCTTGAGGTGAAAACTGGGAAGAAAGGAGAAGTGAGGAGGGAATGTGATGCGTTTAATACTATCTAA | 639 | 51.64 | MFFPSTIDVFSMQFATRDLVAIAGGPSYAVRLGRKDGFVSRSNNSIPDLNQSIDKSISLFESKGFTIRETVALYGGRTIGFSNCREISGRIFNFSESTPTDPEMNPRFAEALRKACGGYEKNPGMSAYSDAVTPVKFDNQYYRNLLRGMGLSVSDHALVKDPRTRKFVEMYAGDQALFFRDFAHAMEKMSVLEVKTGKKGEVRRECDAFNTI | 212 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 30187499 | 30189882 | + | Sed0010159.1 | Sed12g1902 | 732858 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed12g1902 | 212 | Gene3D | - | 13 | 210 | - | - | |
| Sed12g1902 | 212 | PRINTS | Haem peroxidase superfamily signature | 130 | 145 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Haem peroxidase superfamily signature | 69 | 84 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Haem peroxidase superfamily signature | 24 | 36 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | Pfam | Peroxidase | 12 | 173 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Plant peroxidase signature | 144 | 161 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Plant peroxidase signature | 184 | 197 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Plant peroxidase signature | 68 | 80 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Plant peroxidase signature | 24 | 39 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | PRINTS | Plant peroxidase signature | 128 | 143 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | SUPERFAMILY | Heme-dependent peroxidases | 12 | 210 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | ProSiteProfiles | Plant heme peroxidase family profile. | 12 | 210 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | FunFam | Peroxidase | 47 | 189 | - | - | |
| Sed12g1902 | 212 | PANTHER | - | 12 | 210 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Sed12g1902 | 212 | Gene3D | Peroxidase, domain 2 | 47 | 189 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed12g1902 | Sed-Chr12:30187499 | Sed14g0905 | Sed-Chr14:17988303 | 7.00E-40 | dispersed | |
| Sed12g1902 | Sed-Chr12:30187499 | Sed08g0165 | Sed-Chr8:898595 | 9.10E-80 | wgd | |
| Sed12g1902 | Sed-Chr12:30187499 | Sed08g2534 | Sed-Chr8:38049478 | 5.30E-64 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed12g1902 | K00430 | - | csv:101213178 | 296.975 |