Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1903 ATGGGCGGCAATGGCAAGTTCCGGTGGAGGTCTCTCTTCTCCCATCGTCGTTCTGATTCCGTCGTCGAGTCGAAGGAGCCTCCTCTGGAGTTCATTTGCCCTGTTTCTGGCTCGTTAATGGCGGACCCCGTCGTCGTATCTTCCGGCCAGACCTTTGAGCGCGTTTCTGCGCAGGTTTGCAGAAGTTTGGGATTCTCCCCTGCGTCTGACGATGGTTCCAAGCCGGATTTCACTAACGTGATTCCGAATTTGGCTATGAAGAAGACGATTCTCAATTGGTGTGAGGATTCCGGAGCTCGGAAACCTCAGCCGCCGGATTACGCCGCCGTGGAGAGGATTGTTGATGCATTAATGGAGAAGGAGAAGGAGAAGGAGAAGGTTAATGCCGGAATTAGGGATTCGTCGGATATGGATCTGTTAGCCGGAGTGTCGGATTTGCCGCCGAGGAATATCTCGCACGCGGCGACGGAGTTAGGTCACCGGCCTGAACACTTCTACACGAGCTCGTCGGAGGAATCGGTCATCGTCGGAGGAAGTCCGGGAACTCCTCTGCCGTTCACGACTCGACCTGCGTCTTTTTTCTCTTCGTCTTCTTCCTCTGAAATCGTGGAAAACGAATCGCTTATTCAAACTCCAGGCCCTAATTCATCAGTATTATCCCAAGAAGAGAAGGAATTATTGTCAAATCTCAAGAGTCCTGATGTGTTCAAGCAAGAAGAAGGTGTAATTTCTCTGAGAAAAATCACGAAAGAAGATGAGAAAATTAGGGTTTTGCTCTGTACGCCATCGATTCTTTCATCTCTCCGTCCTTTGATCTCGTCGCGATATTCCACCGTACAAATCAACGCTGTTGCTTCTCTGGTAAATCTCTCCCTCGAAAAGCCGAACAAGCAGAAGATCGCTAGGTCAGGATTGGTTCCAAATCTAATCGATGCTCTGAAAGGAGGACACGCTGAAGCTCAAGAACACGCTGCCGGAGCGCTCTTCAGCTTAGCATTAGAGGACGAAAATCGGATGACAATCGGAGTTCTTGGTGCATTGCCGCCGCTCCTCTACGCACTCCGATCGGAAAGTGAGATCACTCGAAAGGACTCCGCTCTGTGTCTCTACAACCTAACGATGATTCAGAGCAATCGAGTGAAGCTCGTGAAACTCGGCGCAGTAGCAACGTTACTCTCCATGGTTAAATCAGGAGCCTCAACGAATTGGCTGCTGCTGATCCTCTGCAACATTGCTGTGTGCCCGGAGGGAAGATCGGCAATGCTGGACGCCGATGCTGTCGGGCTCTTGATTGGAATGCTGAAGGAGAAAGAGTTGGACTCAAAATCGAGTCGCGAGAATTGCGTTGCGGCATTGTATGCATTGAGCTATGGAAGTATGAGGTTCAAAGGACTGGCGAAGGACGCTGGAGCAATGGAGGTTTTGAGGGAGATTGCTGAGAGAGGAAGTGAGAGAGCTAGAGAGAAAGCTAAGAAGATATTGGAGAGGATGAAGATGAGAGGGAGATTTTATGAATACGACGATGAAGAAGAAGACGATAATGGTGGCGAGTCGAGTTTTGACGGTGGTGGACTGAGTTCAACTCGGTACCGAAACGGGGGTGGAAGAAGTTCCCGATCGGCTAATACGACGCCTTTTTAG 1641 50.15 MGGNGKFRWRSLFSHRRSDSVVESKEPPLEFICPVSGSLMADPVVVSSGQTFERVSAQVCRSLGFSPASDDGSKPDFTNVIPNLAMKKTILNWCEDSGARKPQPPDYAAVERIVDALMEKEKEKEKVNAGIRDSSDMDLLAGVSDLPPRNISHAATELGHRPEHFYTSSSEESVIVGGSPGTPLPFTTRPASFFSSSSSSEIVENESLIQTPGPNSSVLSQEEKELLSNLKSPDVFKQEEGVISLRKITKEDEKIRVLLCTPSILSSLRPLISSRYSTVQINAVASLVNLSLEKPNKQKIARSGLVPNLIDALKGGHAEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSESEITRKDSALCLYNLTMIQSNRVKLVKLGAVATLLSMVKSGASTNWLLLILCNIAVCPEGRSAMLDADAVGLLIGMLKEKELDSKSSRENCVAALYALSYGSMRFKGLAKDAGAMEVLREIAERGSERAREKAKKILERMKMRGRFYEYDDEEEDDNGGESSFDGGGLSSTRYRNGGGRSSRSANTTPF 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30199477 30202729 + Sed0004810.1 Sed12g1903 732859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1903 546 Gene3D - 222 403 IPR011989 -
Sed12g1903 546 Gene3D - 404 503 IPR011989 -
Sed12g1903 546 SUPERFAMILY RING/U-box 22 103 - -
Sed12g1903 546 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g1903 546 PANTHER U BOX DOMAIN-CONTAINING 19 498 - -
Sed12g1903 546 Pfam U-box domain 28 95 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g1903 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
Sed12g1903 546 MobiDBLite consensus disorder prediction 520 546 - -
Sed12g1903 546 MobiDBLite consensus disorder prediction 505 546 - -
Sed12g1903 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515(InterPro)
Sed12g1903 546 Pfam Armadillo/beta-catenin-like repeat 335 373 IPR000225 GO:0005515(InterPro)
Sed12g1903 546 SMART arm_5 293 333 IPR000225 GO:0005515(InterPro)
Sed12g1903 546 SMART arm_5 414 457 IPR000225 GO:0005515(InterPro)
Sed12g1903 546 SMART arm_5 334 374 IPR000225 GO:0005515(InterPro)
Sed12g1903 546 SMART Ubox_2 30 93 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed12g1903 546 SUPERFAMILY ARM repeat 224 494 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1683 Sed-Chr1:12197376 Sed12g1903 Sed-Chr12:30199477 8.40E-90 dispersed
Sed03g0156 Sed-Chr3:967307 Sed12g1903 Sed-Chr12:30199477 5.70E-94 dispersed
Sed12g1903 Sed-Chr12:30199477 Sed05g3439 Sed-Chr5:43311464 2.10E-11 dispersed
Sed12g1903 Sed-Chr12:30199477 Sed12g1904 Sed-Chr12:30199477 1.60E-242 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1903 - - - 0.0