Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1906 ATGGCGATTCCAATCCCTAGCCGGCAGCTGTTCATCGGCGGCGAGTGGCGGGAACCAGTTCTCAAGAAGCGCATCCCCGTCGTCAACCCCGCTACTGAAGAAATCATCGGATCGATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTAGAAAGGCTCTTGAGAGGAATAAAGGCAAAGATTGGGCGTCGGCTTCGGGGGCTGTTCGTGCTAAGTATTTGCGCGCTATTGCTGCTAAGGTAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACAATTGACTGTGGAAAACCTTTGGAAGAAGCTGCATGGGACATTGATGATGTTGCTGGCTGCTTCGAATACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAACTCCTGTTTCCGTTCCCATGGATACTTTCAAGAGCTATATTCTTAAAGAACCCATTGGAGTTGTTGGTTTGATTACTCCTTGGAATTATCCTCTATTGATGGCTTCATGGAAAGTTGCACCTGCCTTGGCTGCTGGATGTGCTGCCATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAACTGGGCGAAATCTGTAAAGATGTTGGTCTTCCACCTGGCATTTTGAATATTCTGACAGGATTGGGCCCTGAAGCTGGTGCCCCTCTAGCATCTCATCCTCATGTTGACAAGATTGCATTTACTGGGAGTGGTCCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTATTTTTGAGGATGTTGACCTAAATAAGGCTGCTGAATGGACTGTGTTTGGTTGTTTTTGGACAAACGGCCAGATTTGTAGTGCCACATCCCGTCTACTCGTGCATGAAAATATTGCTGATAAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTGGAAGAAGGTTGCAGGCTTGGTCCTGTTGTTAGTGCAGGGCAGTATGAGAAAGTGCTGAAGTTTGTCTCAACTGCTGAGAGTGAAGGTGCAAAGATTCTATTTGGTGGAGTTCGCCCTACGCACCTAAACAAGGGATACTTCGTTGAGCCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGCCTTTGGACCTGTTCTATGTGTGAAGACTTTCAGTTCCGAGGAAGAAGCTATCGAATTAGCAAACGATACAATATATGGGCTGGGTTCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAGCCAAGGCTTTACAAGCAGGAATTGTGTGGATTAATTGCTCGCAACCAACCTTAACTCAAGCTCCGTGGGGAGGCAACAAACGCAGCGGCTTTGGTCGAGAACTAGGAGAATGGGGACTTGAAAACTATCTGACTGTAAAGCAGGTTACTCGGTATGTATCCGACGAACCATGGGGATGGTACAAATCGCCTTCTAAACTGTAA 1512 45.83 MAIPIPSRQLFIGGEWREPVLKKRIPVVNPATEEIIGSIPAATAEDVELAVDAARKALERNKGKDWASASGAVRAKYLRAIAAKVTERKSELAKLETIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKTPVSVPMDTFKSYILKEPIGVVGLITPWNYPLLMASWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPPGILNILTGLGPEAGAPLASHPHVDKIAFTGSGPTGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLNKAAEWTVFGCFWTNGQICSATSRLLVHENIADKFLDKLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKILFGGVRPTHLNKGYFVEPAIITNVTTSMQIWREEAFGPVLCVKTFSSEEEAIELANDTIYGLGSAVISNDLERCERVAKALQAGIVWINCSQPTLTQAPWGGNKRSGFGRELGEWGLENYLTVKQVTRYVSDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30211078 30217527 + Sed0016621.1 Sed12g1906 732862

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1906 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Sed12g1906 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Sed12g1906 503 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Sed12g1906 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Sed12g1906 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Sed12g1906 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Sed12g1906 503 CDD ALDH_F10_BADH 27 487 - -
Sed12g1906 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Sed12g1906 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Sed12g1906 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1906 K00130 - - csv:101213657 929.472
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0169 Sed-Chr8:923304 Sed12g1906 Sed-Chr12:30211078 9.30E-262 dispersed
Sed09g1651 Sed-Chr9:39932342 Sed12g1906 Sed-Chr12:30211078 1.10E-46 dispersed
Sed09g1652 Sed-Chr9:39932342 Sed12g1906 Sed-Chr12:30211078 1.10E-46 dispersed
Sed10g0811 Sed-Chr10:5865051 Sed12g1906 Sed-Chr12:30211078 2.50E-39 dispersed
Sed10g0812 Sed-Chr10:5867089 Sed12g1906 Sed-Chr12:30211078 2.50E-39 dispersed
Sed12g1865 Sed-Chr12:29840797 Sed12g1906 Sed-Chr12:30211078 5.40E-99 dispersed
Sed12g1882 Sed-Chr12:30009036 Sed12g1906 Sed-Chr12:30211078 3.40E-99 dispersed
Sed12g1906 Sed-Chr12:30211078 Sed08g0168 Sed-Chr8:923304 1.40E-280 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1865 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G24503 72.8 9.3e-216 747.3
Sed08g0748 . 1 490 Aldehyde Dehydrogenase Gene Family AT3G24503 72.0 5.8e-210 728.0
Sed03g2695 . 48 532 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 7.7e-162 568.2
Sed12g1882 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 55.3 5.7e-157 552.0
Sed12g1882 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 80.3 6.8e-257 884.0
Sed03g2695 . 1 532 Aldehyde Dehydrogenase Gene Family AT3G48000 76.7 1.6e-250 862.8
Sed12g1865 . 10 503 Aldehyde Dehydrogenase Gene Family AT3G48000 54.7 3.7e-162 569.3
Sed08g0748 . 17 490 Aldehyde Dehydrogenase Gene Family AT3G48000 54.4 2.0e-155 547.0
Sed03g2695 . 1 382 Aldehyde Dehydrogenase Gene Family AT1G23800 76.6 3.3e-171 599.0
Sed12g1882 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 73.3 1.3e-164 577.0
Sed12g1865 . 11 347 Aldehyde Dehydrogenase Gene Family AT1G23800 54.9 7.0e-105 378.6
Sed08g0748 . 17 358 Aldehyde Dehydrogenase Gene Family AT1G23800 54.2 7.0e-105 378.6
Sed06g1004 . 2 486 Aldehyde Dehydrogenase Gene Family AT4G34240 63.4 3.8e-183 639.0
Sed05g2367 . 16 487 Aldehyde Dehydrogenase Gene Family AT4G34240 66.3 8.4e-183 637.9
Sed05g2368 . 16 335 Aldehyde Dehydrogenase Gene Family AT4G34240 65.6 8.6e-119 425.2
Sed05g2367 . 77 487 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 2.9e-178 622.5
Sed06g1004 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 70.8 8.7e-175 610.9
Sed01g3300 . 68 482 Aldehyde Dehydrogenase Gene Family AT1G44170 51.1 2.6e-118 423.3
Sed07g1685 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 51.6 1.1e-116 417.9
Sed05g2368 . 77 334 Aldehyde Dehydrogenase Gene Family AT1G44170 74.0 1.2e-110 397.9
Sed01g3301 . 68 355 Aldehyde Dehydrogenase Gene Family AT1G44170 52.1 4.3e-81 299.7
Sed07g1685 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.3 6.3e-185 644.8
Sed05g1142 . 2 478 Aldehyde Dehydrogenase Gene Family AT4G36250 56.0 5.0e-158 555.4
Sed01g3300 . 12 483 Aldehyde Dehydrogenase Gene Family AT4G36250 55.3 1.9e-157 553.5
Sed05g1143 . 2 353 Aldehyde Dehydrogenase Gene Family AT4G36250 54.5 3.5e-111 399.8
Sed01g3301 . 12 357 Aldehyde Dehydrogenase Gene Family AT4G36250 53.5 1.1e-109 394.8
Sed05g3313 . 37 539 Aldehyde Dehydrogenase Gene Family AT1G79440 76.7 2.3e-233 805.8
Sed06g0796 . 10 502 Aldehyde Dehydrogenase Gene Family AT2G14170 80.8 7.6e-233 804.3
Sed10g0810 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0811 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed10g0812 . 210 644 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.7e-174 609.8
Sed08g0168 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 80.4 2.0e-250 862.4
Sed12g1906 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 79.6 2.9e-246 848.6
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT1G74920 80.6 3.0e-235 812.0
Sed08g0168 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.7 6.4e-257 884.0
Sed12g1906 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 5.0e-254 874.4
Sed08g0169 . 1 474 Aldehyde Dehydrogenase Gene Family AT3G48170 81.4 4.6e-239 824.7
Sed08g1569 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.2 2.6e-266 915.2
Sed08g1568 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 90.3 3.4e-266 914.8
Sed11g0187 . 1 438 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 4.4e-234 808.1
Sed01g1829 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 78.6 6.0e-256 880.9
Sed08g2577 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2576 . 17 180 Aldehyde Dehydrogenase Gene Family AT5G62530 74.5 3.0e-66 250.8
Sed08g2578 . 17 153 Aldehyde Dehydrogenase Gene Family AT5G62530 74.6 4.1e-55 213.8
Sed04g3105 . 1 589 Aldehyde Dehydrogenase Gene Family AT3G66658 75.2 6.8e-274 940.6
Sed04g3106 . 1 516 Aldehyde Dehydrogenase Gene Family AT3G66658 75.0 1.9e-239 826.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007146 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 3 37