Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1906 ATGGCGATTCCAATCCCTAGCCGGCAGCTGTTCATCGGCGGCGAGTGGCGGGAACCAGTTCTCAAGAAGCGCATCCCCGTCGTCAACCCCGCTACTGAAGAAATCATCGGATCGATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCTAGAAAGGCTCTTGAGAGGAATAAAGGCAAAGATTGGGCGTCGGCTTCGGGGGCTGTTCGTGCTAAGTATTTGCGCGCTATTGCTGCTAAGGTAACAGAGAGGAAATCAGAATTAGCAAAGCTTGAAACAATTGACTGTGGAAAACCTTTGGAAGAAGCTGCATGGGACATTGATGATGTTGCTGGCTGCTTCGAATACTATGCAGATCTTGCCGAAGGGTTGGATGCAAAGCAAAAAACTCCTGTTTCCGTTCCCATGGATACTTTCAAGAGCTATATTCTTAAAGAACCCATTGGAGTTGTTGGTTTGATTACTCCTTGGAATTATCCTCTATTGATGGCTTCATGGAAAGTTGCACCTGCCTTGGCTGCTGGATGTGCTGCCATATTGAAGCCATCAGAATTGGCATCTGTCACCTGTTTGGAACTGGGCGAAATCTGTAAAGATGTTGGTCTTCCACCTGGCATTTTGAATATTCTGACAGGATTGGGCCCTGAAGCTGGTGCCCCTCTAGCATCTCATCCTCATGTTGACAAGATTGCATTTACTGGGAGTGGTCCTACTGGAAGCAAGATTATGACAGCAGCTGCTCAACTTGTCAAGCCTGTTACCATGGAACTTGGTGGAAAAAGTCCAATTGTTATTTTTGAGGATGTTGACCTAAATAAGGCTGCTGAATGGACTGTGTTTGGTTGTTTTTGGACAAACGGCCAGATTTGTAGTGCCACATCCCGTCTACTCGTGCATGAAAATATTGCTGATAAATTCTTGGATAAGCTCGTGCAATGGTGCAAGAACATTAAGATTTCAGATCCTTTGGAAGAAGGTTGCAGGCTTGGTCCTGTTGTTAGTGCAGGGCAGTATGAGAAAGTGCTGAAGTTTGTCTCAACTGCTGAGAGTGAAGGTGCAAAGATTCTATTTGGTGGAGTTCGCCCTACGCACCTAAACAAGGGATACTTCGTTGAGCCAGCCATTATTACTAATGTTACAACCTCCATGCAAATATGGAGAGAAGAAGCCTTTGGACCTGTTCTATGTGTGAAGACTTTCAGTTCCGAGGAAGAAGCTATCGAATTAGCAAACGATACAATATATGGGCTGGGTTCTGCTGTGATATCAAATGATTTAGAAAGGTGTGAGCGTGTAGCCAAGGCTTTACAAGCAGGAATTGTGTGGATTAATTGCTCGCAACCAACCTTAACTCAAGCTCCGTGGGGAGGCAACAAACGCAGCGGCTTTGGTCGAGAACTAGGAGAATGGGGACTTGAAAACTATCTGACTGTAAAGCAGGTTACTCGGTATGTATCCGACGAACCATGGGGATGGTACAAATCGCCTTCTAAACTGTAA 1512 45.83 MAIPIPSRQLFIGGEWREPVLKKRIPVVNPATEEIIGSIPAATAEDVELAVDAARKALERNKGKDWASASGAVRAKYLRAIAAKVTERKSELAKLETIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKTPVSVPMDTFKSYILKEPIGVVGLITPWNYPLLMASWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPPGILNILTGLGPEAGAPLASHPHVDKIAFTGSGPTGSKIMTAAAQLVKPVTMELGGKSPIVIFEDVDLNKAAEWTVFGCFWTNGQICSATSRLLVHENIADKFLDKLVQWCKNIKISDPLEEGCRLGPVVSAGQYEKVLKFVSTAESEGAKILFGGVRPTHLNKGYFVEPAIITNVTTSMQIWREEAFGPVLCVKTFSSEEEAIELANDTIYGLGSAVISNDLERCERVAKALQAGIVWINCSQPTLTQAPWGGNKRSGFGRELGEWGLENYLTVKQVTRYVSDEPWGWYKSPSKL 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30211078 30217527 + Sed0016621.1 Sed12g1906 732862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1906 503 Pfam Aldehyde dehydrogenase family 17 485 IPR015590 GO:0016491(InterPro)
Sed12g1906 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491(InterPro)
Sed12g1906 503 SUPERFAMILY ALDH-like 5 489 IPR016161 GO:0016491(InterPro)
Sed12g1906 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491(InterPro)
Sed12g1906 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 502 - -
Sed12g1906 503 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 12 277 - -
Sed12g1906 503 CDD ALDH_F10_BADH 27 487 - -
Sed12g1906 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491(InterPro)
Sed12g1906 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620(InterPro)
Sed12g1906 503 FunFam Betaine aldehyde dehydrogenase 263 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0169 Sed-Chr8:923304 Sed12g1906 Sed-Chr12:30211078 9.30E-262 dispersed
Sed09g1651 Sed-Chr9:39932342 Sed12g1906 Sed-Chr12:30211078 1.10E-46 dispersed
Sed09g1652 Sed-Chr9:39932342 Sed12g1906 Sed-Chr12:30211078 1.10E-46 dispersed
Sed10g0811 Sed-Chr10:5865051 Sed12g1906 Sed-Chr12:30211078 2.50E-39 dispersed
Sed10g0812 Sed-Chr10:5867089 Sed12g1906 Sed-Chr12:30211078 2.50E-39 dispersed
Sed12g1865 Sed-Chr12:29840797 Sed12g1906 Sed-Chr12:30211078 5.40E-99 dispersed
Sed12g1882 Sed-Chr12:30009036 Sed12g1906 Sed-Chr12:30211078 3.40E-99 dispersed
Sed12g1906 Sed-Chr12:30211078 Sed08g0168 Sed-Chr8:923304 1.40E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1906 K00130 - csv:101213657 929.472