Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1909 ATGGCGGCGGCCGGAGAGAATCCCTCCGGCGAGCTCATTGTTGGGGTTTCAGATGACTCCAGTCAGAGTAGTTCTAAGCAGCTTCATGTTCTTGCGGTCGACGATAGCCTCGTCGACCGCAAGGTCATTGAGCGGCTGCTCAAGATCTCGTCGTGCAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTTTGCAATATCTTGGTTTGGATGCTGAAACTGAAACCACTTCTCTTCAGTTTAATAATCAGGGTTTGGAAGTGAATCTCATCATCACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTTAAGAAGATCAAGGAATCATCGACTTTGAGAGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAATTGCTTAAAGGAAGGGGCTGAAGAATTTATAGTGAAGCCTGTGAAATTATCTGATGTCAAAAGATTGAAAGATTTCATTATGAAAGGAGAAAATGAAGACTGGAAAGTTGGGACCAAGAGGAAGCTCCATCTTGATCATGATCACCACCCCTTGTCTCCCGGGTCTCCGACAACATTGCCGGAAGCTTTTGGATTTCGGCCACGATCGCTGCCGTTGTCGCGACGGTCGCTGATCACACGTTCGTCGACGTCGAAGAAGCCTAGGTTTCTCAATGGTGACTAG 681 46.4 MAAAGENPSGELIVGVSDDSSQSSSKQLHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDAETETTSLQFNNQGLEVNLIITDYSMPEMTGYELLKKIKESSTLREIPVVIMSSENILARIDNCLKEGAEEFIVKPVKLSDVKRLKDFIMKGENEDWKVGTKRKLHLDHDHHPLSPGSPTTLPEAFGFRPRSLPLSRRSLITRSSTSKKPRFLNGD 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30226674 30228883 + Sed0028149.1 Sed12g1909 732865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1909 226 MobiDBLite consensus disorder prediction 1 21 - -
Sed12g1909 226 SUPERFAMILY CheY-like 27 155 IPR011006 -
Sed12g1909 226 ProSiteProfiles Response regulatory domain profile. 29 160 IPR001789 GO:0000160(InterPro)
Sed12g1909 226 CDD REC_typeA_ARR 30 155 - -
Sed12g1909 226 Pfam Response regulator receiver domain 30 152 IPR001789 GO:0000160(InterPro)
Sed12g1909 226 Gene3D - 27 184 - -
Sed12g1909 226 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 191 IPR045279 GO:0009736(InterPro)
Sed12g1909 226 SMART REC_2 28 156 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1909 Sed-Chr12:30226674 Sed14g0016 Sed-Chr14:229095 7.50E-40 dispersed
Sed12g1909 Sed-Chr12:30226674 Sed12g1910 Sed-Chr12:30226674 6.20E-119 tandem
Sed12g1909 Sed-Chr12:30226674 Sed04g0660 Sed-Chr4:5217170 1.70E-47 wgd
Sed12g1909 Sed-Chr12:30226674 Sed08g0172 Sed-Chr8:951671 1.40E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40250 PF00072 Response_reg 1.80E-20 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1909 K14492 - csv:101214143 263.077