Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1910 ATGGCGGCGGCCGGAGAGAATCCCTCCGGCGAGCTCATTGTTGGGGTTTCAGATGACTCCAGTCAGAGTAGTTCTAAGCAGCTTCATGTTCTTGCGGTCGACGATAGCCTCGTCGACCGCAAGGTCATTGAGCGGCTGCTCAAGATCTCGTCGTGCAAAGGTGATGAAGAAGATTGTGAATTGAGAGAATTAATTGGGTCGAATTTGATTTTGGGGGTTGCTTTTGCAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTTTGCAATATCTTGGTTTGGATGCTGAAACTGAAACCACTTCTCTTCAGTTTAATAATCAGGGTTTGGAAGTGAATCTCATCATCACAGATTACTCCATGCCTGAAATGACAGGATATGAACTGCTTAAGAAGATCAAGGAATCATCGACTTTGAGAGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTTTGGCTCGAATAGACAATTGCTTAAAGGAAGGGGCTGAAGAATTTATAGTGAAGCCTGTGAAATTATCTGATGTCAAAAGATTGAAAGATTTCATTATGAAAGGAGAAAATGAAGACTGGAAAGTTGGGACCAAGAGGAAGCTCCATCTTGATCATGATCACCACCCCTTGTCTCCCGGGTCTCCGACAACATTGCCGGAAGCTTTTGGATTTCGGCCACGATCGCTGCCGTTGTCGCGACGGTCGCTGATCACACGTTCGTCGACGTCGAAGAAGCCTAGGTTTCTCAATGGTGACTAG 750 45.6 MAAAGENPSGELIVGVSDDSSQSSSKQLHVLAVDDSLVDRKVIERLLKISSCKGDEEDCELRELIGSNLILGVAFAVTAVESGRSALQYLGLDAETETTSLQFNNQGLEVNLIITDYSMPEMTGYELLKKIKESSTLREIPVVIMSSENILARIDNCLKEGAEEFIVKPVKLSDVKRLKDFIMKGENEDWKVGTKRKLHLDHDHHPLSPGSPTTLPEAFGFRPRSLPLSRRSLITRSSTSKKPRFLNGD 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30226674 30228883 + Sed0028149.2 Sed12g1910 732866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1910 249 SMART REC_2 57 179 IPR001789 GO:0000160(InterPro)
Sed12g1910 249 MobiDBLite consensus disorder prediction 1 21 - -
Sed12g1910 249 ProSiteProfiles Response regulatory domain profile. 29 183 IPR001789 GO:0000160(InterPro)
Sed12g1910 249 SUPERFAMILY CheY-like 27 178 IPR011006 -
Sed12g1910 249 Gene3D - 22 205 - -
Sed12g1910 249 CDD REC_typeA_ARR 30 178 - -
Sed12g1910 249 Pfam Response regulator receiver domain 74 175 IPR001789 GO:0000160(InterPro)
Sed12g1910 249 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 214 IPR045279 GO:0009736(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0660 Sed-Chr4:5217170 Sed12g1910 Sed-Chr12:30226674 1.80E-43 dispersed
Sed08g0172 Sed-Chr8:951671 Sed12g1910 Sed-Chr12:30226674 2.80E-71 dispersed
Sed12g1910 Sed-Chr12:30226674 Sed14g0016 Sed-Chr14:229095 4.20E-36 dispersed
Sed12g1909 Sed-Chr12:30226674 Sed12g1910 Sed-Chr12:30226674 6.20E-119 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40251 PF00072 Response_reg 1.10E-15 CL0304 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1910 K14492 - csv:101214143 249.98