Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1913 ATGGCGGCTGCATCGACTCGCGAGCAAGATCTGCTCTCCATTCTCACAGCCAAGCTCGCTAAACTGGCGATTCCTCCGTCGTCGTCGTCTTCCTCCGCCGTTCACGACTTCGATTTCTCCGACGTGTTCAATGAACAACAACAGCCAGAGATGATTCAGAGCAGATCTCACTCGTTTGTAGGTCCGTCTTCGCTCCATTGTTTCCGAGATCTGGATCCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGAGGAAGGCAAATCGAAGGAAATTGGTGAGATTGAGGGGAAGGTTGGGGTGGGGGATTTTGAGATTCTTCGAGTGGTGGGGAGAGGGGCGTTTGGGAAGGTGTTTTTGGTGAGGAAGAGAGGAGATCGCAAGGGGAATAAGGATGGGATTTACGCTATGAAAGTTATGAAGAAGCATTTCATCATAAAGAAGGATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACTAAACTTGCTCACCCTTTCATCGTTCAACTTCGCTATTCTTTCCAGACCAAATCAAAACTTTATTTGATTCTTGATTTCATAAACGGGGGACATCTCTTTTACCATCTGTACCGGCAGAAGATCTTCAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTATCGGCTGTTTCGCATCTTCACGACTGCGGTATTGTGCATAGAGATCTCAAGCCTGAGAACATCCTCATGGATGCTGATGGCCATGTTGTGCTTACAGATTTTGGACTGGCGAAGGAAATTGACGAATCGAGCCGGTCGAATTCGTTGTGTGGAACAACAGAATACATGGCTCCAGAAATCTTGCTTTCTAAAGGTCACAACAAAGATGCTGATTGGTGGAGCGTTGGAATCCTCTTGTACGAAATGCTTAGCGGCCAGCCTCCCTTCACACATGCTAATAGAAAAAAGCTTCAAGAAAGAATAATCAAAGAGAAAGTGAAACTTCCACCATTCCTAACCACCGAAGCTCACTCTTTGCTCAGAGGGCTGTTGCAGAAGGAGCCTTCTAAAAGATTAGGTAGCGGACCCAACGGAGGGGCCGAGATAAAAAGGCACAAATGGTTTCGACTAGTGAACTGGAAGAAATTGGAATGCAGGGAGCTGCAACCGAAATTCAAGCCGGATGTCAATGGAACTGACTGCACAGCTAATTTCGATAAATGTTGGACATCGATGCCCCTCGACGACTCGCCAGCTCCAACGCCGACCGACAGTGGACACTTTCAGGGATTCTCGTACGTTGCTCCGAACCCTTGGCTTTCATCATCTGGATAG 1305 47.82 MAAASTREQDLLSILTAKLAKLAIPPSSSSSSAVHDFDFSDVFNEQQQPEMIQSRSHSFVGPSSLHCFRDLDPQEEEEEEEEEDEEGKSKEIGEIEGKVGVGDFEILRVVGRGAFGKVFLVRKRGDRKGNKDGIYAMKVMKKHFIIKKDHVDYMKAERDILTKLAHPFIVQLRYSFQTKSKLYLILDFINGGHLFYHLYRQKIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGILLYEMLSGQPPFTHANRKKLQERIIKEKVKLPPFLTTEAHSLLRGLLQKEPSKRLGSGPNGGAEIKRHKWFRLVNWKKLECRELQPKFKPDVNGTDCTANFDKCWTSMPLDDSPAPTPTDSGHFQGFSYVAPNPWLSSSG 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30259913 30263481 - Sed0022867.1 Sed12g1913 732869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1913 434 MobiDBLite consensus disorder prediction 71 92 - -
Sed12g1913 434 Pfam Protein kinase C terminal domain 386 423 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 ProSitePatterns Protein kinases ATP-binding region signature. 110 138 IPR017441 GO:0005524(InterPro)
Sed12g1913 434 Gene3D Phosphorylase Kinase; domain 1 103 407 - -
Sed12g1913 434 FunFam Non-specific serine/threonine protein kinase 101 213 - -
Sed12g1913 434 SMART pkinase_C_6 366 425 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 MobiDBLite consensus disorder prediction 73 89 - -
Sed12g1913 434 Gene3D Transferase(Phosphotransferase) domain 1 189 384 - -
Sed12g1913 434 SMART serkin_6 104 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 SUPERFAMILY Protein kinase-like (PK-like) 101 429 IPR011009 -
Sed12g1913 434 ProSiteProfiles Protein kinase domain profile. 104 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 ProSiteProfiles AGC-kinase C-terminal domain profile. 366 433 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1913 434 PANTHER RIBOSOMAL PROTEIN S6 KINASE 73 427 - -
Sed12g1913 434 FunFam Non-specific serine/threonine protein kinase 189 384 - -
Sed12g1913 434 Pfam Protein kinase domain 104 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0141 Sed-Chr2:30910012 Sed12g1913 Sed-Chr12:30259913 2.60E-130 dispersed
Sed04g2660 Sed-Chr4:39043080 Sed12g1913 Sed-Chr12:30259913 8.10E-11 dispersed
Sed12g1913 Sed-Chr12:30259913 Sed13g1883 Sed-Chr13:23834491 3.90E-53 dispersed
Sed12g1913 Sed-Chr12:30259913 Sed08g0180 Sed-Chr8:1003832 8.60E-202 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80019 PF00069 Pkinase 7.90E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1913 K04688 - csv:101214867 674.085