Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1916 ATGGATCCTCCAATCGTAAACGAATCTTCCTTCTCCACTGCGAACCCTTCTTCTTACACCTTGGCCGCCATTTGGCCTCTCGTCGGGAACCATGGCGGAGCCGCCGCATTGGGGCTCCGACTCGCTAATCTCGATGGGTCGGTGGAGGAATCGACGGTCACGGAGCTCAGCGGCGGCGGGTGGAAGAGGAAGGATGTGAGCTCTGAGGATGATGAATCTTCCAGAATGGTTTCCACCACTGCTCCCAATCAATTGAGTAACTCAAATGGTAAACGGAGAAAGGCCGTGGAATACAAAGATGAAAATGGTGGTATAAAAGCTGAAGTCGAACCTTGTTCCGCAGATGGTCAAACGCTGGCTGAGCAAAGCCCGAAACCTTCTGAACCACCAAAAGATTACATCCATGTGAGAGCAAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCAAGAAGAGAGAAGATCAGTGAGAGAATGAAAATGTTGCAGGACTTGGTTCCTGGCTGTAATAAGGTTATTGGAAAAGCACTCGTCCTTGATGAGATTATAAATTATATCGAATCCTTGCAACGTCAGGTCGAGTTCCTCTCCATGAAGCTTGAAGCTGTGAGTGCCAGGATGAACATAAGCCCTGGAATAGAAGGTTTTACATTAAATAATATTGTTAATCAACCATATGATGCAGCTGGAATGTCATATGGTTCACAAGCAGCAAGAGAATATATCCAAGGTGCACAACCTGAATGGTTACACAGGCAGATTGGTGGAAGTTTTGAAAGGACATCTTAG 798 46.62 MDPPIVNESSFSTANPSSYTLAAIWPLVGNHGGAAALGLRLANLDGSVEESTVTELSGGGWKRKDVSSEDDESSRMVSTTAPNQLSNSNGKRRKAVEYKDENGGIKAEVEPCSADGQTLAEQSPKPSEPPKDYIHVRARRGQATDSHSLAERARREKISERMKMLQDLVPGCNKVIGKALVLDEIINYIESLQRQVEFLSMKLEAVSARMNISPGIEGFTLNNIVNQPYDAAGMSYGSQAAREYIQGAQPEWLHRQIGGSFERTS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30294831 30306763 - Sed0005600.1 Sed12g1916 732872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1916 265 Coils Coil 182 209 - -
Sed12g1916 265 FunFam Basic helix-loop-helix transcription factor 139 211 - -
Sed12g1916 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983(InterPro)
Sed12g1916 265 SMART finulus 148 198 IPR011598 GO:0046983(InterPro)
Sed12g1916 265 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 68 220 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed12g1916 265 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983(InterPro)
Sed12g1916 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 211 IPR036638 GO:0046983(InterPro)
Sed12g1916 265 MobiDBLite consensus disorder prediction 73 91 - -
Sed12g1916 265 CDD bHLH_AtBPE_like 132 214 - -
Sed12g1916 265 MobiDBLite consensus disorder prediction 55 131 - -
Sed12g1916 265 Gene3D - 139 213 IPR036638 GO:0046983(InterPro)
Sed12g1916 265 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1894 Sed-Chr3:12901700 Sed12g1916 Sed-Chr12:30294831 4.20E-56 dispersed
Sed08g0185 Sed-Chr8:1019787 Sed12g1916 Sed-Chr12:30294831 1.10E-64 dispersed
Sed12g1916 Sed-Chr12:30294831 Sed13g1831 Sed-Chr13:23247158 2.00E-31 dispersed
Sed12g1916 Sed-Chr12:30294831 Sed08g0184 Sed-Chr8:1019787 1.30E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40253 PF00010 HLH 1.00E-07 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1916 - - - 0.0