Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1922 ATGGAAGCTAGGGTTCCGACCAACAAATGGATCGCGACGGCCGTCGGAATCTGGATCCAATGCATCTGCGGCGCATCCTACACCTTCAGCATCTATTCTTCCGCTCTCAAATCCACTCAGGCCTACGATCAATCCACCCTCGACACCGTTTCCGTTTTCAAGGACATCGGCGCCAATGCCGGCGTCATTTCCGGCTTTCTCTACTCCGCCGTCCACCGCCGAACCGGCCCGTGGCTGGTCCACGCGGCCGGAGCGGTTCAGTGCTTCGTCGGGTATATTTTCATCTGGGCCGCCGTCGCTGGGTTGATCGACCGCCCGCCGGTTCCGGCCATGTGTTTCTTCATGTTCTTGGCTGCCCACGCGCAGACGTTTTTCAATACGGCGAATGTGGTGACCGGCGTTCATAATTTTTCGCAGTTTGGTGGGACGATCGTTGGCATCATGAAGGGGTATCTTGGTCTTAGTGGAGCACTACTAATCCAAGTTTATAACACGACGTGCAATGGAGAACCAAGCAATTTTCTCCTCATGCTGGCTGTTTTGCCCACACTTCTGTCCATCATGTTCATGTGGTTCATTAGAATTGACAAAACGGAGTCTAGAAATGAAATGAAGCACTTGAACTCATTGTCAGCACTTGCTGTGATACTTGCATTTTACTTAATGGTTGTGATCATTTTTTACAACACTTTATCCTTTGCCTCATGGGCTCGTTTCTTTACATTCGCGATACTCTCGGTTCTCCTCGCTGCTCCTCTTGGAATTGCCATGAATGCTCGGAGGGAGGACTTTACAAGGCCATCTCCATCACTCATCACCGAAAAAGACCCTGTTCTTAACAAACCAAAGCCAGTGAATGTAGAGAATTCTGTGGAATATCAGGAGTTGCTCAGTGATGAGAGGCAGACAATGACTGTTGCAAACTCTAGAGCTCCTCGAGCCATGAATGTTTTCGAAGCTGTTCGGACTATAAACTTCTGGGTGCTATTTGTGGCCATGGTGTGTGGAATGGGTTCTGGATTGGCCACCATAAACAACATGAGCCAACTTGGGCAATCTCTTGGTTACACAACAACAGAGATAAAGACATTTGTTTCCTTATGGAGTATATGGAACTTTCTCGGACGTTTCGGAGCTGGTTACACCTCTGATTTTCTTCTCCACTCATATGGCTGGGCTAGGCCATTGTTAATGGCAATTACTCTACTGATAATGAGCGTTGGCCACATTGTGATCGCCACTGGTTTTTCTGGAAATCTGTATGTGGGTTCAATTCTTGTTGGCATATGCTACGGCTCACAGTGGTCACTGATGCCCACAATCACTTCTGAGATATTTGGGTTAGAGCATATGGGAACTATCTACAACACCATAGCCATAGCCAGCCCTTTGGGTTCGTACATTTTTTCGGTTCGAGTTATCGGTTACATTTACGACAGAGAAGCTGCCGGACAACATGGCTCCTGCTCTGGCACACACTGTTTTGTGGTATCTTTTCTGGTCATGGCCGTCGTGGCTTTCTTGGGTTTCCTTGTTGCTGCTGCCCTCTTCTTTCGAACTCGGAGATTTTACCGACTGGCTTTCGAAAGAAGAACCGTCATTTGTAGTGCATATGCCTTTTTAAATAAAAACCATGTTTCAAGGTTCAACAACAAATGGGTATCAACAGTCGCCAGCATATGGATCCAATGCACCAGTGGATCTCTCTACACTTTCTCAATCTACTCACAAACCCTAAAATCAACTCAGGGTTATGATCAGTCCACTTTGGATGTTCTTTCCGTTTTCAAAGACATCGGTGTTAACTGCGGCCTCCTTGCCGGATTTCTCTACTACTTCGCCGCCGATGATGGTGGTCGCCGCCGCCGCCTTCGTGGGCCGTGGGTTGTTCACTTCGCCGGTGCGATTCAGTGCTTTTTGGGTTATTTCCTTATGTGGGCTGCCGTTGCTGGGGTTATTCCTCGGCCGCCGGTTCCTGTTATGTGCCTTTTCATGTTCGTGGCTGCTCATGCTCAGAGCTTCTTCAATACGGCTAATGTTGTTACTGGTGTTCGGAATTTTCCTAGTTACAGTGGCACGATTGTTGGTATCATGAAGGGGTTTCTTGGTTTGAGTGGAGCAATATTGATTCAAGTATACGAGACAATATTTAATGAACAACCTGCTTCTTTTCTTCTAATGCTGGCATTGCTACCGACCCTTAATTCCTTATTGTGCATGTTCTTTGTGAGAATCCACACTACAGACGATGGAACTGAAAAAGAGCATCTGAACACTCTATCCATAATTACTCTGCTCCTTGCTGCTTACCTTATGCTCAAGATAGTTCTAGAGCATATTTTCACCTTCCAATTCCCTCTACATGTTGCTACATTTTTTCTACTTTTGATGTTGCTTGTATCTCCTCTATATATTGTAATTAGAGCTCAACAGAGAGAGTACAGGAAGATTTTGCACCCTTCCTTTACTGAGAGTGACCAGCTGATTGGTCACTCGAATCAAGAGATCATGGATTTTCACGATGAACGGGGAAGCGAATCTGAAGAAAGTTTGAATCTCTTTCAAGCTTTATACACCATAGATTTCTGGATATTATTTTTTGCCACAGCCTGTGGCATGGGAACAGGGTTAGCTACAGTGAATAATATCAGCCAGATAGGATTATCTCTTGGTTACACAAGCTTGGAGATAAATACTTTGGTTTCCTTGTGGAGCATCTGGAATTTTTTTGGTCGTTTCGGAGCTGGGTATGTATCGGATTATTTTCTCCATGCCAAAGGATGGGCTAGGCCGTTATTCATGTTCATCACTCTGGCAACCATGAGCATTGGACATGTAGTGATTGCCTCTGGCCTGCCTGGTGCTCTTTTTGCTGGTTCGGTAGTAATCGGTGTTTGTTATGGGTCTCAATGGTCACTAATGCCAACAATTACGTCTGAAATATTTGGTGTTATACACATGGGTACTATATTTAATGCCATTACAATAGCAAGCCCGGTTGGATCTTTTATCTTTTCAGTTCGAGTTGTTGGGTATATATACGACAAGGAAGCATCGGGTGAAGGAGATACTTGTACTGGAATTAAGTGCTTCATGTTATCATTTCTGTTTATGGCTTTTGCCACCCTTTTGGGCTCTGTAGCAGCCCTTGGCTTGTTTTTCTGGAGAAGAAATTTCTACAATCAAGTTGTTCTTAGAAGGCTGCAACACCCATCGAGTGGATAA 3225 45.46 MEARVPTNKWIATAVGIWIQCICGASYTFSIYSSALKSTQAYDQSTLDTVSVFKDIGANAGVISGFLYSAVHRRTGPWLVHAAGAVQCFVGYIFIWAAVAGLIDRPPVPAMCFFMFLAAHAQTFFNTANVVTGVHNFSQFGGTIVGIMKGYLGLSGALLIQVYNTTCNGEPSNFLLMLAVLPTLLSIMFMWFIRIDKTESRNEMKHLNSLSALAVILAFYLMVVIIFYNTLSFASWARFFTFAILSVLLAAPLGIAMNARREDFTRPSPSLITEKDPVLNKPKPVNVENSVEYQELLSDERQTMTVANSRAPRAMNVFEAVRTINFWVLFVAMVCGMGSGLATINNMSQLGQSLGYTTTEIKTFVSLWSIWNFLGRFGAGYTSDFLLHSYGWARPLLMAITLLIMSVGHIVIATGFSGNLYVGSILVGICYGSQWSLMPTITSEIFGLEHMGTIYNTIAIASPLGSYIFSVRVIGYIYDREAAGQHGSCSGTHCFVVSFLVMAVVAFLGFLVAAALFFRTRRFYRLAFERRTVICSAYAFLNKNHVSRFNNKWVSTVASIWIQCTSGSLYTFSIYSQTLKSTQGYDQSTLDVLSVFKDIGVNCGLLAGFLYYFAADDGGRRRRLRGPWVVHFAGAIQCFLGYFLMWAAVAGVIPRPPVPVMCLFMFVAAHAQSFFNTANVVTGVRNFPSYSGTIVGIMKGFLGLSGAILIQVYETIFNEQPASFLLMLALLPTLNSLLCMFFVRIHTTDDGTEKEHLNTLSIITLLLAAYLMLKIVLEHIFTFQFPLHVATFFLLLMLLVSPLYIVIRAQQREYRKILHPSFTESDQLIGHSNQEIMDFHDERGSESEESLNLFQALYTIDFWILFFATACGMGTGLATVNNISQIGLSLGYTSLEINTLVSLWSIWNFFGRFGAGYVSDYFLHAKGWARPLFMFITLATMSIGHVVIASGLPGALFAGSVVIGVCYGSQWSLMPTITSEIFGVIHMGTIFNAITIASPVGSFIFSVRVVGYIYDKEASGEGDTCTGIKCFMLSFLFMAFATLLGSVAALGLFFWRRNFYNQVVLRRLQHPSSG 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30358727 30367377 - Sed0007028.1 Sed12g1922 732878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1922 1074 CDD MFS_Mch1p_like 9 509 - -
Sed12g1922 1074 SUPERFAMILY MFS general substrate transporter 209 522 IPR036259 -
Sed12g1922 1074 SUPERFAMILY MFS general substrate transporter 499 747 IPR036259 -
Sed12g1922 1074 CDD MFS_Mch1p_like 552 1045 - -
Sed12g1922 1074 Gene3D MFS general substrate transporter like domains 757 1052 IPR036259 -
Sed12g1922 1074 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 551 1061 - GO:0016020(PANTHER)
Sed12g1922 1074 SUPERFAMILY MFS general substrate transporter 8 200 IPR036259 -
Sed12g1922 1074 SUPERFAMILY MFS general substrate transporter 762 1058 IPR036259 -
Sed12g1922 1074 Gene3D MFS general substrate transporter like domains 319 744 IPR036259 -
Sed12g1922 1074 Pfam Nodulin-like 552 807 IPR010658 -
Sed12g1922 1074 Pfam Nodulin-like 9 256 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g1002 Sed-Chr10:8679342 Sed12g1922 Sed-Chr12:30358727 7.70E-24 dispersed
Sed11g2265 Sed-Chr11:35903390 Sed12g1922 Sed-Chr12:30358727 4.40E-71 dispersed
Sed12g1922 Sed-Chr12:30358727 Sed13g2079 Sed-Chr13:25557416 1.90E-61 dispersed
Sed12g1922 Sed-Chr12:30358727 Sed08g0190 Sed-Chr8:1047004 2.60E-183 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1922 - - - 0.0