Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1924 ATGGGGCGTAAGAAGAAAATCATTGATCCGCGTTCTAAACAGTCTCCGGCGGCTCGTGGAGTCGCCGTTGATGTTCCGTGTTTGGCGGACGCCGCCGACCAGATTTCGGTACCTGACAAGGCGAGTAATCTGAGTAAAAGTAGGATCGAGACGGTGTTTCTTGATGAATCGGATGGCTTGTCTTATTCCACGATTAAGCTTGAATGTGAGCGGGCTCTTACTGCGCTTCGGCGTGGGAATCATACTAAGGCACTTCGGCTTATGAAGGAGTTGAGTTTGAGAAATGACAGTGCTGTTCACTCTGCTTTGATTCATCGGGTTCAGGGTACTATTTGTGTTAAGGTAGCATCGATTATTGATGACTTGAATGCGAAGCAGCGCCATTTGAAGAATGCGATCGAGTCTGCTCGTAAAGCAGTTGAGCTCTCACCTAACTCGATTGAGTTTTCGCATTTCTATGCAAATTTGTTGTACGAGGTTGCAAATGATGCGAGGGAGTATGAGGAGGTGGTGCAAGAGTGTGAGCGGGCCATTGGCATTGAAAATCCAATCGATCCAGCAAAGGAAAGCTTGCAGGATGAAAAGGACCAGAAGATATCTACTGCAGAAGCACGAATTGCACACGTTCAGACTGAATTGAGGCAGTTGATTCAAAAGTCAAATATATATTCGATATCATCTTTGATGAAGAACTTGAGTAATGGGGAGAAGTTCAAGTTGATTCCGATTAGAAAAGTGTCTGAAGACCCAATGGAGGTGAGGTTAGTTCAGGCTAGAAGGGCAAACGAAATTAAGAAGGCTACCAAAACGCCTGAGGAGCGAAGGAAAGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTCTGAGACACCTCAAATGCAAAATGAAGAAGGTAAAGCTGATCGAACCCTAGATTCAACTTCAGGGTCTGCTACAAGAGTTGGTGAACGGCGGAAACATGGCAATTTACGGAAACAAGGATCTTCAGCAGAAAGGAGGGATTGGGTTCATTCTTTTTGGAATTCCATGTGCCTAGGAGCCAAGAAAGATTTTCTTAAGATCAAAATAAGTGATCTTAAGACCCATATTAGTTCTTCAAAGGATGTTTTGGCGAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATGATGCCAATAAAACATGGAAATTTTGGGCTTGCTGCAGATGTGACATGAAATTTGTGGATTCGGAATCTCATATACACCATGTGATTCAGGAGCACTTGGGTAGCCTTTTGCCGAAAATGCAATCTATTTTGCCTCAAAATGTTGACAATGAGTGGGCCGAAATGCTTCTTAATTGCTCTTGGAAACCATTGGATGTTTCAGCTGCAGTTATAATACTCACAGATCAAACAAAATGCAAAGATTCCAAGTCGGTTGAAGATATCTTCTCACAGCATCATTCAGATTATGATAACTGTTTCAAGGATGCATGGGATTCTTCTCTAGAGAAGCACAAGCCCGATTATGAGAATAGTTTAAGTGAATGTGATCTTTATGAGAAAAATACCAACAACGAATTTAAGACCTATCATGAAAATCAGGGTTCTGTCGCACATTCCTTATCTGACAGCTTTCCAGTATCTGATGACCCTGAGCGTACAAAGCTTCTTGAGCAAATTCATGTGTTATTTGAGTTGCTTATTAGACATAAATATCTTGCTGCAAGCCATCTAAACAAGGTTATACAATTTACAATGGATGAGTTACAGGGTCTTCCTTCTGGATCTCATCTTCTAAACCAGGGTCTTGATCAAACACCACTATGTATTTGCTTTCTAGATGTTTCTCAGCTTAGGAAAATCCTCAAATTTTTGCAAGAATTATCCCAGTTTTGTGGTATTGGTAGATACACAGATAAAAGTACTGGTCAAATTGAAGATTCAAAGAGTGATAAACAAGCTGTCAAAGTCAAGGAGAAAATTGTTCTCAATGAAGATGCGTCACTTCTCCTCCTTAATGAGTGTCTGCTATCATCTGAGACCCTTGATGCTATTGGTCAAGTTGCAGTCACAGATCATATGCCTGCTGCAACTGCTAAGGATGTTACAGCAAATGTGGTTCTTTCTGGCGTTGATCCTTTTATATCCTGGATATATGCAGGTCTCTCTAGTGGGGAACAGTTGGCATCATGGGCACAAACAATGGAAGAGAAGATACGGCAACGAGTGGAAATCTTTCAAATGCTTCGAAAGGAATTCGACCAACTGCAGAGCCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCATTGCGGTCGGTAGAGGATCTCTGCCTTGAAGAAGGCAAGAAGAGGGAAGGTTTGATTGAATTTATTCCCACTAGTTATGAGTCAGTTCTGAGGAAACGAAGAGAGGAGCTTATTGAGGCCGAAAATGACGTGATGTTTATTGGCAATAGGTTTGAGTTAGATGCTCTATCTAATGTTTTGAAAGAAGCTAAAGCTCTGAATGTTAATCAATTTGGATATGAGGAAACCTTTTCCACCGTGCCTCAGTTATGCGATCTGGAATCGGGTGAAGATGAAGATTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGTATTGAAGTTGCAATACAGAGACAGAAAGAACAGTTATCTATTGAGATTAGCAAAATTGATGCGCGCATCATGCAAAATGTTTCTGGAATGCAACAGTTGGAAATTAAGCTAGAACCTGTTTGTGCAAATGATTATCAATCAATAGTGTTGCCTCTTGTTAACTCATACCTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCCACTAAGAAGTCCGATGCTGCAAGAGAAGCATTTTTAGCGGAACTGGCGCTAGATTCGAAAAAGGGTATCAAAGGAGGGAGTGATCATTCAAGACATGCACATGAAAAGACGAAGGAAAAGAAAAGGAGCAAGGAGTTTAGGAAAGCCAAGGAATCTAAGGTGGTCAGTGGTCCTGAGCAGCATGTACTTCATGGCGAGGCTGTGGATGGAGATTCCTTTCAAGTTTCAGCTGATGGTGATGCTGCAGAGGTGGACATTGCTGTTTTCGAGGATGCTGATGGTTCAAAACTACAGGAGGAAGAGTTTAGACGCAAAATTGAGCTGGAAGCTGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGGAAAATAGAGAATGAGGCAAAACAAAGGCATTTGGCTGAACTACAAAAGAAAACTGCCCAGACAAATTATAATAATCTCACTGGACTTGTCCCCAATGTTGAGCGTGCTGATGAACTTTTAAAGCCTTCTGTGGTGGATCAATTGGCAGAAAATGATTTGGTTCCCGACTTGTCTAGGGTTGGTCTTGCTACACAAAATGCTTTGTCAGGTGTATCCAATGTAGGAGTTCTAGAGAATAGTCTACCGTCATCGGACAGGAGGAAGGGGAGGAAAGGCAGACGGCACAAGGTTGCAATCAAACCAGTAGCTGGAGACGTGGCTTCACTATCTGATAGCCAATTGAATGGGCAAGTTAGGTATCATGAAAATCTCCTGGTAAATAGTGTTAATCCACTTTTTGAAGATGATAGTACAAAAACTTTGAGACTACGACATGTGGAGGATGAAGAGGAGAGGTTTCAAGCTGATTTTCAGAAGGCTGTACGCCAGAGCCTTGATGCATTAAAAGAACAGAAGAAATTACCCGTGATTAGAAATTCCAGGACACCATCTATCAGCTATGGTGAAGTAGATACTAATGGTCTTCCATCAAATGAACTCAATGTAGAAAATGTGCAAGGGGCAGATATATTCGGTACAGGACTTAAGAATGAAGTTGGTGAGTATAATTGCTTTCTGAATGTGATTATTCAGTCATTGTGGCATTTAAGACGGTTTCGAGAAGAGTTTCTTAGAAGATCTATGACTGAGCATATTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTGTATGAAATCTTCGCTGCTTTGCGCATGACGTCAGTAGATTCAAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAATAGCTCTGAGCAATCTATGTCCCGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCTGAAGTTTTGGCAGTCATATTTGATTGCCTACACCAGTCATTTACTCCTAGTTCGAGCGTTTCTGACACAGAATCAGTAGAAAGCAATTGCATGGGGTCTTGGGACTGTGCAAGTGACACTTGTTTGGTACATTCTATCTTCAGAATGGACATTTTTGAAAGAATGAATTGCTACAGTTGTGGCCTAGAGTCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATTAATGCCAGTGCTCTTCGAACAATGAAGGTTATGTGTCCAGAAAGCTCCTTCGATGAACTTCTGAATATTGTTGAAATGAATCATCAGCTAGCTTGTGATCCGGATGTTGGTGGCTGCGGAAAGCTCAATTACATTCACCACTTTCTCTCTGCACCACCACACGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATCACAGCGACATTAGCTGCTCTTAGTACTGAGATAGACATCAGTGTTCTTTATCGGGGTCTAGATCCAAGGAATACCCATAATTTGGTATCTGTGGTTTGCTATTACGGTCAACACTATCATTGTTTTGCCTACCGTCATGACACGAAAAACTGGATAATGTATGATGATAGAACCGTTAAGGTAATTGGTGGCTGGGCCGATGTTCTTACCATGTGCGAAAAAGGGCACTTGCAACCGCAGGTTCTTTTCTTCGAAGCTGCAAATTAG 4827 41.81 MGRKKKIIDPRSKQSPAARGVAVDVPCLADAADQISVPDKASNLSKSRIETVFLDESDGLSYSTIKLECERALTALRRGNHTKALRLMKELSLRNDSAVHSALIHRVQGTICVKVASIIDDLNAKQRHLKNAIESARKAVELSPNSIEFSHFYANLLYEVANDAREYEEVVQECERAIGIENPIDPAKESLQDEKDQKISTAEARIAHVQTELRQLIQKSNIYSISSLMKNLSNGEKFKLIPIRKVSEDPMEVRLVQARRANEIKKATKTPEERRKEIEVRVAAARLLQQKSETPQMQNEEGKADRTLDSTSGSATRVGERRKHGNLRKQGSSAERRDWVHSFWNSMCLGAKKDFLKIKISDLKTHISSSKDVLANEVISEALSFYDANKTWKFWACCRCDMKFVDSESHIHHVIQEHLGSLLPKMQSILPQNVDNEWAEMLLNCSWKPLDVSAAVIILTDQTKCKDSKSVEDIFSQHHSDYDNCFKDAWDSSLEKHKPDYENSLSECDLYEKNTNNEFKTYHENQGSVAHSLSDSFPVSDDPERTKLLEQIHVLFELLIRHKYLAASHLNKVIQFTMDELQGLPSGSHLLNQGLDQTPLCICFLDVSQLRKILKFLQELSQFCGIGRYTDKSTGQIEDSKSDKQAVKVKEKIVLNEDASLLLLNECLLSSETLDAIGQVAVTDHMPAATAKDVTANVVLSGVDPFISWIYAGLSSGEQLASWAQTMEEKIRQRVEIFQMLRKEFDQLQSLCERKCEHLNYEEALRSVEDLCLEEGKKREGLIEFIPTSYESVLRKRREELIEAENDVMFIGNRFELDALSNVLKEAKALNVNQFGYEETFSTVPQLCDLESGEDEDWRAKDYLHQVDTCIEVAIQRQKEQLSIEISKIDARIMQNVSGMQQLEIKLEPVCANDYQSIVLPLVNSYLRAHLEDLAEKDATKKSDAAREAFLAELALDSKKGIKGGSDHSRHAHEKTKEKKRSKEFRKAKESKVVSGPEQHVLHGEAVDGDSFQVSADGDAAEVDIAVFEDADGSKLQEEEFRRKIELEADERKLEETLEYQRKIENEAKQRHLAELQKKTAQTNYNNLTGLVPNVERADELLKPSVVDQLAENDLVPDLSRVGLATQNALSGVSNVGVLENSLPSSDRRKGRKGRRHKVAIKPVAGDVASLSDSQLNGQVRYHENLLVNSVNPLFEDDSTKTLRLRHVEDEEERFQADFQKAVRQSLDALKEQKKLPVIRNSRTPSISYGEVDTNGLPSNELNVENVQGADIFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHIHVGDPCVVCALYEIFAALRMTSVDSRREAVAPTSLRIALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSFTPSSSVSDTESVESNCMGSWDCASDTCLVHSIFRMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCPESSFDELLNIVEMNHQLACDPDVGGCGKLNYIHHFLSAPPHVFTTVLGWQNTCESADDITATLAALSTEIDISVLYRGLDPRNTHNLVSVVCYYGQHYHCFAYRHDTKNWIMYDDRTVKVIGGWADVLTMCEKGHLQPQVLFFEAAN 1608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30393697 30402178 - Sed0025522.1 Sed12g1924 732880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1924 1608 PANTHER UBIQUITIN SPECIFIC PROTEINASE 33 1606 IPR052398 -
Sed12g1924 1608 Pfam Ubiquitin carboxyl-terminal hydrolase 1276 1603 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Sed12g1924 1608 SUPERFAMILY Cysteine proteinases 1275 1605 IPR038765 -
Sed12g1924 1608 Coils Coil 199 219 - -
Sed12g1924 1608 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1275 1607 IPR028889 -
Sed12g1924 1608 Coils Coil 119 139 - -
Sed12g1924 1608 MobiDBLite consensus disorder prediction 289 333 - -
Sed12g1924 1608 Pfam Protein of unknown function (DUF627) 72 181 IPR006866 -
Sed12g1924 1608 Pfam Protein of unknown function (DUF629) 340 873 IPR006865 -
Sed12g1924 1608 Gene3D Tetratricopeptide repeat domain 61 218 IPR011990 GO:0005515(InterPro)
Sed12g1924 1608 MobiDBLite consensus disorder prediction 961 997 - -
Sed12g1924 1608 Gene3D Cysteine proteinases 1264 1608 - -
Sed12g1924 1608 MobiDBLite consensus disorder prediction 316 333 - -
Sed12g1924 1608 MobiDBLite consensus disorder prediction 961 996 - -
Sed12g1924 1608 Coils Coil 1047 1067 - -
Sed12g1924 1608 CDD Peptidase_C19 1367 1605 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1924 - - - 0.0