Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1925 ATGTTGCGAGCCAAGCATATTGGCAGCCTTTCAAACAGTGCCAGGTCGTTTTTTCTTAGTGGACCAAGATGTAACCCAGATGGGTCTTCATGCACATGTCCTGAAGATGAAGCTTGTGTTTCCCAGAGGCAAAAGGCTAGAAGTGATATCTTGCCCTCGAAAAAGTCATCTGCCTTGGTAGCTGGGACTAATAGTTCAGCTAGAGTAGGACGTTTAATTGCAGAAGATACTGCAACGAAAGCTATAGCATCTCACAAAACTATCAATGTCGATCTCCCGGTTTCTATACGACAAGTTACGAATACTGGCACCAATCCTCAGAGGGAAACTGAATGTGTGAGATATGCCAATGGCCTTAACACTGTTCTGGATGATGAGTGCACTACACCAAAGATTTCTGATCAGTTTGTTAAGGCTGGTATTATGGCTGTGAACATATTCTCTGACATTGCAAATTTCAAAGTTCCCTTATCTGACCATGGTGGCTCATCTAAGAGTTGCATGGTTGATCCTGCCCGGACCATTTCATCTGTCAAACCATCAAAAATAAAGCATCTAAGAAGAGAAAACATTTCTAGTGTTCGTTCTAGATCATCCGTTGAAATCCTTGTAGATTCTAAGCCTCGAAATAGTAGTATTAGTAACCATCATGGCCCAAAATGTAAGTCCGAGCAATCCTACGATGTGAAAGGTCCAGATGCCAGGCCACATAAGTCGGTGGTAATTCGTAATATCTCCTCAGACAAATGTGATGAAAGGATTTTACCCCAGAGATCGAGGATTCATTCGAACAGCTTTACGTCACATTTTCATTCCAATGCACAAACCACAGGTTCGGAGTTCACAAATTCTTATAAGAATTTGCCCAAGATTCCGGCTAATTTAAAAGGTTCAATAGGAATGGCCCCAATCACTATGCAGTTTTCCAATGGCTCACATGTTGAGGAAAGTGTTTCTTGCATATTGCAACAACTTAAATGGGGTCCGGCTGCAGAAGATGCTCTTGGGAAATTGAACTGTTCAATTGATGCTTACCAGGCAAACCAAATCCTGAAGCGGGTGGATGACCACTTTGTTGCTCTTGGTTTTTTTAATTGGTTAAAGCGGCTGCCTAGGTTTAGACATGATGGACACACTTATACTACCATGATTGGCCTCCTTGGTCGTGCCAAACAGTTCGGTGCGATAAATAAATTGCTCGATCAGATGTTGAAGGATGGGTGCCAGCCTAGTGTTGTAACATATAATCGTATAATTCATAGTTATGGTCGTGCAAACTACTTGCAAGAAGCTGTTGATGTATTCAAACAAATGCAGGAAGCAGGATGTGAACCCGATCGAGTCACCTACTGCACACTCATTGACATTCATGCTAAATCTGGCTTTCTCAATGTTGCTATGGGAATGTATGAGAAAATGCAAGAGGCTGGCCTCACACCAGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCTCATAGGCTATTCTGTAGGATGGTTGAACAGGGATGTGTTCCAAATTTGGTTACCTACAATATCATGATTGCTCTGCAAGCGAAAGCAAGGAACTACGAGATTGCATTGAAACTGTACCGTGATATGCAACATTCAGGCTTCGAGCCAGATAAGGTGACTTATTGTATAGTCATGGAAGTATTAGGCCATTGTGGTTTCCTTGAGGAGGCAGAAGGCATATTTATTGAAATGAAAAAGAATTGGGTGCCCGATGAACCTGTTTATGGTCTATTAGTGGACTTGTGGGGAAAGTCTGGTAATGTTCAAAAGGCTTGGGCATGGTATCATGATATGCTTAATGCGGGTCTAAAGCCGAATGTGCCTACCTGCAATTCCTTGCTCAGTGCCTTTCTTAGGGTACACCAACTATCAGATGCGTATCAGTTGTTGACTTCAATGCTGACTTTTGGTCTAAGACCTTCTCTACAAACTTATACTCTGCTTCTCAGTTGCTGCACTGATGCGCAAACGAACGACATGGGGTTCTGTTGTGAGCTCATGCAAATCACTGGTCACCCAGCACACACATTCTTGGAGACAATGCCATCAGCTGGACCGAACGGTCAAAATGTGCGAGATCACATGAGCAAATTTCTGGACCTCATGCATAGTGAAGATAGAGAGAGCAAGCGTGGACTAGTGGATGCAGTTGTAGATTTTCTTCATAAATCCGGACTCAAAGAGGAGGCAGGCTGTGTCTGGGAGGCTGCTATGCAAAAGAATGTCTATCCAGATGCTGTGAAGGAGAAAAGCTCCTATTATTGGCTGATTAACTTGCACGTCATGTCCGATGGCACTGCTGTGACAGCGTTGTCTAGGACACTTGCTTGGTTTCGCCAGCAAATGCTTATTTCAGGCATTGGTCCCAGCCGAATCGATATCGTGACTGGTTGGGGTCGGCGAAGTAGGGTCACTGGATCTTCTTTAGTGAGGCAGGCAGTTCAGGACCTGCTGAACATTTGTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGCTGTTTCGTGGGGTCGGGGGAGCCTCTTAGTAGATGGCTGCACCAATCCTATGTGGAGAGGATGCATTTATTGTAG 2616 43.81 MLRAKHIGSLSNSARSFFLSGPRCNPDGSSCTCPEDEACVSQRQKARSDILPSKKSSALVAGTNSSARVGRLIAEDTATKAIASHKTINVDLPVSIRQVTNTGTNPQRETECVRYANGLNTVLDDECTTPKISDQFVKAGIMAVNIFSDIANFKVPLSDHGGSSKSCMVDPARTISSVKPSKIKHLRRENISSVRSRSSVEILVDSKPRNSSISNHHGPKCKSEQSYDVKGPDARPHKSVVIRNISSDKCDERILPQRSRIHSNSFTSHFHSNAQTTGSEFTNSYKNLPKIPANLKGSIGMAPITMQFSNGSHVEESVSCILQQLKWGPAAEDALGKLNCSIDAYQANQILKRVDDHFVALGFFNWLKRLPRFRHDGHTYTTMIGLLGRAKQFGAINKLLDQMLKDGCQPSVVTYNRIIHSYGRANYLQEAVDVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLNVAMGMYEKMQEAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVEQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQHSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMKKNWVPDEPVYGLLVDLWGKSGNVQKAWAWYHDMLNAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLTSMLTFGLRPSLQTYTLLLSCCTDAQTNDMGFCCELMQITGHPAHTFLETMPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSYYWLINLHVMSDGTAVTALSRTLAWFRQQMLISGIGPSRIDIVTGWGRRSRVTGSSLVRQAVQDLLNICSFPFFTENGNSGCFVGSGEPLSRWLHQSYVERMHLL 871
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30405787 30410258 - Sed0004776.1 Sed12g1925 732881

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1925 871 MobiDBLite consensus disorder prediction 197 236 - -
Sed12g1925 871 Pfam PPR repeat 379 408 IPR002885 -
Sed12g1925 871 ProSiteProfiles Smr domain profile. 771 854 IPR002625 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 581 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Sed12g1925 871 Pfam Pentatricopeptide repeat domain 610 667 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Sed12g1925 871 Gene3D - 748 850 IPR036063 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Sed12g1925 871 MobiDBLite consensus disorder prediction 197 220 - -
Sed12g1925 871 Pfam PPR repeat 477 509 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Sed12g1925 871 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Sed12g1925 871 PANTHER OS03G0856100 PROTEIN 156 866 - -
Sed12g1925 871 SMART SMR_2 768 860 IPR002625 -
Sed12g1925 871 MobiDBLite consensus disorder prediction 221 236 - -
Sed12g1925 871 SUPERFAMILY SMR domain-like 769 849 IPR036063 -
Sed12g1925 871 Gene3D Tetratricopeptide repeat domain 330 459 IPR011990 GO:0005515(InterPro)
Sed12g1925 871 Gene3D Tetratricopeptide repeat domain 561 675 IPR011990 GO:0005515(InterPro)
Sed12g1925 871 Gene3D Tetratricopeptide repeat domain 460 560 IPR011990 GO:0005515(InterPro)
Sed12g1925 871 NCBIfam pentatricopeptide repeat 518 551 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 448 482 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 378 412 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 623 655 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 553 582 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 483 516 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 413 446 IPR002885 -
Sed12g1925 871 NCBIfam pentatricopeptide repeat 588 621 IPR002885 -
Sed12g1925 871 Pfam PPR repeat family 515 562 IPR002885 -
Sed12g1925 871 Pfam PPR repeat family 410 458 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1925 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33