Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g1929 | ATGGGTGTTTCGATTTGGGTCTTCTCTTTGATTTTAGCGGCTACCCTTTTGAGCAAAACCTCATTTTCTCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAAGTTCTTTGAATGATACTAAGAATGTTCTTAGTAATTGGATCCCTTCAGATGAATCTCCCTGTAAATGGACTGGTATCTCTTGCCATCCACAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGTGGGATTATATCTCCAAGCATTGGTAAACTTAGTCGACTTCAGAGGCTGGCTCTCCATCAGAATGGATTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCATATACTTGAGGGCTAATTATCTTCAAGGCGGCATACCTTCGAATATTGGAAACCTTTCTTACCTTACCATACTCGATTTATCAAGCAATTCTCTTAAGGGCAGTATACCATCATCAATTGGTCGTCTCACACTCTTGCACAATCTGAATTTGTCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTTTAAGCACCTTTGGGAACGATTCGTTCATTGGTAATCAAGATCTTTGTGGCCGGCAAGTGAACAAGCCTTGTCGAACCTCACTCGGGTTTCCGGTCATTTTACCACATGCTGAAAGCGATGAAGCTGCAGTTCCTGCTAAACGACCCTCTCATTACATCAAAGGACTGTTGATTGGTGCAATATCAGCAGCAGGGTTTGTGTTGGTCATACTTCTTGTATTCGTTTGGACTCGTTTTCTTTCGAAGAAAGAAAGAACAGCAAAGAGTTACACGGAAGTAAGGAAGCAAAATAATGGAAACTCAAGTGCAAAGCTCATTACATTCCATGGCGATCTACCGTATCCAACGTGTGAGATCATAGAAAAGTTGGAGGCCCTTAAAGAGACCAATGTTGTTGGATCAGGCGGGTTTGGCATCGTGTATCGGATGGTCATGAATGATCGTGTAGCATTTGCTGTAAAGAAAATTGATAGGATTCAAGATGGTTCGGACCAAGTTGTTGAAAGAGAATTGGAGATAGTGGGAAGTATTAAACACATAAATTTGGTAAAGTTGCGTGGTTATTGCAGGCTTCCTTCCTCAAAGCTTCTTATATATGACTATCTGGCCGTGGGTAGCTTGGACGATTTCTTACATGAACATAGACGAGAAAATTCTTTGGATTGGAATGCTCGGTTAAACATCGCTCTAGGCTCCGCTCGAGGACTAGCGTATTTGCACCATGATTGCAGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGCCACATGTATCCGACTTCGGCCTCGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGAGTACTTGCAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGTTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCCAGTGATCCATTTTTCTCAAAGAGGGGCTTAAATGTTGTTGGTTGGTTGAACACGCTTCGGGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTCGAAACTGTAGAAGCAATTCTCGAAATAGCAGCGAGGTGCACCGATGGCAACCCAGCTATGCGGCCTACAATGAACCAAGTACTGCAGCTACTAGAGCAAGAGGTAATGTCGCCGTACCCAAGCGATTACTCGGAGTCTCAGTCGGAATATTCGTGA | 1803 | 42.87 | MGVSIWVFSLILAATLLSKTSFSLTEDGLTLLEIKSSLNDTKNVLSNWIPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRAIYLRANYLQGGIPSNIGNLSYLTILDLSSNSLKGSIPSSIGRLTLLHNLNLSTNFFFGEIPDIGVLSTFGNDSFIGNQDLCGRQVNKPCRTSLGFPVILPHAESDEAAVPAKRPSHYIKGLLIGAISAAGFVLVILLVFVWTRFLSKKERTAKSYTEVRKQNNGNSSAKLITFHGDLPYPTCEIIEKLEALKETNVVGSGGFGIVYRMVMNDRVAFAVKKIDRIQDGSDQVVERELEIVGSIKHINLVKLRGYCRLPSSKLLIYDYLAVGSLDDFLHEHRRENSLDWNARLNIALGSARGLAYLHHDCSPKIVHCNIKSSNILLDENLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLQSGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETVEAILEIAARCTDGNPAMRPTMNQVLQLLEQEVMSPYPSDYSESQSEYS | 600 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 30428441 | 30432636 | + | Sed0012864.1 | Sed12g1929 | 732885 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g1929 | 600 | Pfam | Leucine rich repeat N-terminal domain | 25 | 63 | IPR013210 | - | |
Sed12g1929 | 600 | ProSiteProfiles | Protein kinase domain profile. | 311 | 585 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g1929 | 600 | Gene3D | Ribonuclease Inhibitor | 25 | 211 | IPR032675 | - | |
Sed12g1929 | 600 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 24 | 186 | - | - | |
Sed12g1929 | 600 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 169 | 583 | IPR050647 | - | |
Sed12g1929 | 600 | Gene3D | Transferase(Phosphotransferase) domain 1 | 387 | 592 | - | - | |
Sed12g1929 | 600 | Gene3D | Phosphorylase Kinase; domain 1 | 271 | 386 | - | - | |
Sed12g1929 | 600 | SUPERFAMILY | L domain-like | 25 | 184 | - | - | |
Sed12g1929 | 600 | Pfam | Protein kinase domain | 313 | 578 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed12g1929 | 600 | Pfam | Leucine Rich Repeat | 142 | 163 | IPR001611 | GO:0005515(InterPro) | |
Sed12g1929 | 600 | FunFam | LRR receptor-like serine/threonine-protein kinase IOS1 | 387 | 591 | - | - | |
Sed12g1929 | 600 | ProSitePatterns | Protein kinases ATP-binding region signature. | 317 | 340 | IPR017441 | GO:0005524(InterPro) | |
Sed12g1929 | 600 | SUPERFAMILY | Protein kinase-like (PK-like) | 289 | 581 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1837 | Sed-Chr1:13513366 | Sed12g1929 | Sed-Chr12:30428441 | 2.20E-211 | dispersed | |
Sed12g1929 | Sed-Chr12:30428441 | Sed10g1721 | Sed-Chr10:34204923 | 1.10E-69 | dispersed | |
Sed12g1929 | Sed-Chr12:30428441 | Sed12g1930 | Sed-Chr12:30428441 | 3.40E-225 | tandem | |
Sed12g1929 | Sed-Chr12:30428441 | Sed08g2570 | Sed-Chr8:38220240 | 9.10E-218 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80020 | PF00069 | Pkinase | 2.70E-43 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g1929 | - | - | - | 0.0 |