Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1929 ATGGGTGTTTCGATTTGGGTCTTCTCTTTGATTTTAGCGGCTACCCTTTTGAGCAAAACCTCATTTTCTCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAAGTTCTTTGAATGATACTAAGAATGTTCTTAGTAATTGGATCCCTTCAGATGAATCTCCCTGTAAATGGACTGGTATCTCTTGCCATCCACAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGTGGGATTATATCTCCAAGCATTGGTAAACTTAGTCGACTTCAGAGGCTGGCTCTCCATCAGAATGGATTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCATATACTTGAGGGCTAATTATCTTCAAGGCGGCATACCTTCGAATATTGGAAACCTTTCTTACCTTACCATACTCGATTTATCAAGCAATTCTCTTAAGGGCAGTATACCATCATCAATTGGTCGTCTCACACTCTTGCACAATCTGAATTTGTCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTTTAAGCACCTTTGGGAACGATTCGTTCATTGGTAATCAAGATCTTTGTGGCCGGCAAGTGAACAAGCCTTGTCGAACCTCACTCGGGTTTCCGGTCATTTTACCACATGCTGAAAGCGATGAAGCTGCAGTTCCTGCTAAACGACCCTCTCATTACATCAAAGGACTGTTGATTGGTGCAATATCAGCAGCAGGGTTTGTGTTGGTCATACTTCTTGTATTCGTTTGGACTCGTTTTCTTTCGAAGAAAGAAAGAACAGCAAAGAGTTACACGGAAGTAAGGAAGCAAAATAATGGAAACTCAAGTGCAAAGCTCATTACATTCCATGGCGATCTACCGTATCCAACGTGTGAGATCATAGAAAAGTTGGAGGCCCTTAAAGAGACCAATGTTGTTGGATCAGGCGGGTTTGGCATCGTGTATCGGATGGTCATGAATGATCGTGTAGCATTTGCTGTAAAGAAAATTGATAGGATTCAAGATGGTTCGGACCAAGTTGTTGAAAGAGAATTGGAGATAGTGGGAAGTATTAAACACATAAATTTGGTAAAGTTGCGTGGTTATTGCAGGCTTCCTTCCTCAAAGCTTCTTATATATGACTATCTGGCCGTGGGTAGCTTGGACGATTTCTTACATGAACATAGACGAGAAAATTCTTTGGATTGGAATGCTCGGTTAAACATCGCTCTAGGCTCCGCTCGAGGACTAGCGTATTTGCACCATGATTGCAGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGCCACATGTATCCGACTTCGGCCTCGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGAGTACTTGCAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGTTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGGAAGAGACCCAGTGATCCATTTTTCTCAAAGAGGGGCTTAAATGTTGTTGGTTGGTTGAACACGCTTCGGGGAGAAGACCAATTGGAGAACATAGTGGATAATAGGTGCAAGAATGCAGATGTCGAAACTGTAGAAGCAATTCTCGAAATAGCAGCGAGGTGCACCGATGGCAACCCAGCTATGCGGCCTACAATGAACCAAGTACTGCAGCTACTAGAGCAAGAGGTAATGTCGCCGTACCCAAGCGATTACTCGGAGTCTCAGTCGGAATATTCGTGA 1803 42.87 MGVSIWVFSLILAATLLSKTSFSLTEDGLTLLEIKSSLNDTKNVLSNWIPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRAIYLRANYLQGGIPSNIGNLSYLTILDLSSNSLKGSIPSSIGRLTLLHNLNLSTNFFFGEIPDIGVLSTFGNDSFIGNQDLCGRQVNKPCRTSLGFPVILPHAESDEAAVPAKRPSHYIKGLLIGAISAAGFVLVILLVFVWTRFLSKKERTAKSYTEVRKQNNGNSSAKLITFHGDLPYPTCEIIEKLEALKETNVVGSGGFGIVYRMVMNDRVAFAVKKIDRIQDGSDQVVERELEIVGSIKHINLVKLRGYCRLPSSKLLIYDYLAVGSLDDFLHEHRRENSLDWNARLNIALGSARGLAYLHHDCSPKIVHCNIKSSNILLDENLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLQSGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGLNVVGWLNTLRGEDQLENIVDNRCKNADVETVEAILEIAARCTDGNPAMRPTMNQVLQLLEQEVMSPYPSDYSESQSEYS 600
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 30428441 30432636 + Sed0012864.1 Sed12g1929 732885
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1929 600 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Sed12g1929 600 ProSiteProfiles Protein kinase domain profile. 311 585 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1929 600 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Sed12g1929 600 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Sed12g1929 600 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 169 583 IPR050647 -
Sed12g1929 600 Gene3D Transferase(Phosphotransferase) domain 1 387 592 - -
Sed12g1929 600 Gene3D Phosphorylase Kinase; domain 1 271 386 - -
Sed12g1929 600 SUPERFAMILY L domain-like 25 184 - -
Sed12g1929 600 Pfam Protein kinase domain 313 578 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1929 600 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Sed12g1929 600 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 591 - -
Sed12g1929 600 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Sed12g1929 600 SUPERFAMILY Protein kinase-like (PK-like) 289 581 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1837 Sed-Chr1:13513366 Sed12g1929 Sed-Chr12:30428441 2.20E-211 dispersed
Sed12g1929 Sed-Chr12:30428441 Sed10g1721 Sed-Chr10:34204923 1.10E-69 dispersed
Sed12g1929 Sed-Chr12:30428441 Sed12g1930 Sed-Chr12:30428441 3.40E-225 tandem
Sed12g1929 Sed-Chr12:30428441 Sed08g2570 Sed-Chr8:38220240 9.10E-218 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80020 PF00069 Pkinase 2.70E-43 CL0016 Sed PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1929 - - - 0.0