Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1930 ATGGGTGTTTCGATTTGGGTCTTCTCTTTGATTTTAGCGGCTACCCTTTTGAGCAAAACCTCATTTTCTCTCACTGAAGATGGTTTGACATTGTTGGAAATCAAAAGTTCTTTGAATGATACTAAGAATGTTCTTAGTAATTGGATCCCTTCAGATGAATCTCCCTGTAAATGGACTGGTATCTCTTGCCATCCACAGGACTCTCGTGTCAGCTCAATTAATCTACCATTCATGCAACTAGGTGGGATTATATCTCCAAGCATTGGTAAACTTAGTCGACTTCAGAGGCTGGCTCTCCATCAGAATGGATTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCCATATACTTGAGGGCTAATTATCTTCAAGGCGGCATACCTTCGAATATTGGAAACCTTTCTTACCTTACCATACTCGATTTATCAAGCAATTCTCTTAAGGGCAGTATACCATCATCAATTGGTCGTCTCACACTCTTGCACAATCTGAATTTGTCTACCAACTTTTTCTTTGGAGAAATCCCAGATATTGGAGTTTTAAGCACCTTTGGGAACGATTCGTTCATTGGTAATCAAGATCTTTGTGGCCGGCAAGTGAACAAGCCTTGTCGAACCTCACTCGGGTTTCCGGTCATTTTACCACATGCTGAAAGCGATGAAGCTGCAGTTCCTGCTAAACGACCCTCTCATTACATCAAAGGACTGTTGATTGGTGCAATATCAGCAGCAGGGTTTGTGTTGGTCATACTTCTTGTATTCGTTTGGACTCGTTTTCTTTCGAAGAAAGAAAGAACAGCAAAGAGTTACACGGAAGTAAGGAAGCAAAATAATGGAAACTCAAGTGCAAAGCTCATTACATTCCATGGCGATCTACCGTATCCAACGTGTGAGATCATAGAAAAGTTGGAGGCCCTTAAAGAGACCAATGTTGTTGGATCAGGCGGGTTTGGCATCGTGTATCGGATGGTCATGAATGATCGTGTAGCATTTGCTGTAAAGAAAATTGATAGGATTCAAGATGGTTCGGACCAAGTTGTTGAAAGAGAATTGGAGATAGTGGGAAGTATTAAACACATAAATTTGGTAAAGTTGCGTGGTTATTGCAGGCTTCCTTCCTCAAAGCTTCTTATATATGACTATCTGGCCGTGGGTAGCTTGGACGATTTCTTACATGAACATAGACGAGAAAATTCTTTGGATTGGAATGCTCGGTTAAACATCGCTCTAGGCTCCGCTCGAGGACTAGCGTATTTGCACCATGATTGCAGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGCCACATGTATCCGACTTCGGCCTCGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGGTGCAATTCCCTATACTTCTTTTTGGTATTTAGCTACAATGATGATCCAAAACTTCGATTCAGGATTTTAA 1515 41.58 MGVSIWVFSLILAATLLSKTSFSLTEDGLTLLEIKSSLNDTKNVLSNWIPSDESPCKWTGISCHPQDSRVSSINLPFMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNELANCSELRAIYLRANYLQGGIPSNIGNLSYLTILDLSSNSLKGSIPSSIGRLTLLHNLNLSTNFFFGEIPDIGVLSTFGNDSFIGNQDLCGRQVNKPCRTSLGFPVILPHAESDEAAVPAKRPSHYIKGLLIGAISAAGFVLVILLVFVWTRFLSKKERTAKSYTEVRKQNNGNSSAKLITFHGDLPYPTCEIIEKLEALKETNVVGSGGFGIVYRMVMNDRVAFAVKKIDRIQDGSDQVVERELEIVGSIKHINLVKLRGYCRLPSSKLLIYDYLAVGSLDDFLHEHRRENSLDWNARLNIALGSARGLAYLHHDCSPKIVHCNIKSSNILLDENLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPGAIPYTSFWYLATMMIQNFDSGF 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30428441 30432636 + Sed0012864.2 Sed12g1930 732886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1930 504 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Sed12g1930 504 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Sed12g1930 504 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Sed12g1930 504 Pfam Protein kinase domain 313 486 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1930 504 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Sed12g1930 504 Gene3D Transferase(Phosphotransferase) domain 1 387 490 - -
Sed12g1930 504 SUPERFAMILY L domain-like 25 184 - -
Sed12g1930 504 ProSiteProfiles Protein kinase domain profile. 311 504 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1930 504 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Sed12g1930 504 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Sed12g1930 504 PANTHER OS04G0122200 PROTEIN 40 143 IPR051809 -
Sed12g1930 504 FunFam Protein kinase superfamily protein 387 460 - -
Sed12g1930 504 SUPERFAMILY Protein kinase-like (PK-like) 289 484 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2570 Sed-Chr8:38220240 Sed12g1930 Sed-Chr12:30428441 6.20E-166 dispersed
Sed12g1930 Sed-Chr12:30428441 Sed04g2510 Sed-Chr4:38068566 8.80E-49 dispersed
Sed12g1929 Sed-Chr12:30428441 Sed12g1930 Sed-Chr12:30428441 3.40E-225 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80021 PF00069 Pkinase 5.60E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1930 - - - 0.0