Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1936 ATGGAGGCTGAAGATTTGCCAAACACAGATGATAGAGTTCAATCAAGAGGAGATGAAGAACCTGTTGCCAAACAAGATGTTCTTCACAAGGTCTCTTTTATGGGAGACTTGGAAAAGCCCTCCATGGAACCTCTCTCAGTCGCATCAGCTTCTTCAACTTGGAAGGAAGAGGATCATCACCAAGAACAAAGAATAAAAATGGCAAAACTTGAAATGAGCCAAGTGAGGGAAGAAAACCAGAGGCTAAAGAACTGTTTGGATCAAATGATAAAGGATTACGAGAGCCTCAAAAGACAGTTCCAAGACATCACTCAAAAATCGACACAAACAAGTGCGAGTACAATTAACAACGACGAGGTCGAAGAAGCCGACGACATGGTTTCACTCACATTGGGAAGATCCTCAAAAGATCAAGGCAAGAAAAAAATAGAACTTGACAACAAGGATCATAAAATGTTGGAGCTGAAACAAGATTGTTGGGGCTCGCTTGGAGTTGGTGATAGAACAACAAACATCAAAACCCCATCAGTTGAACACATTCAAAGCCCAACGGATAGTGAACAAGCTAAAGAGGAAGAAGCCGGCGAGACTTGGCCCCCGAGTAAGGCATCGAAGGGTCTGCCGGCGGCCGGAGAAGATGAAATTTCTCAGCAAAATCCTCCCAAGAAAACTAGGGTTTGTGTGAGAGCTCGTTGCGATACTCCAACGATGAATGATGGATGCCAATGGAGGAAATATGGGCAGAAGATTGCAAAAGGAAACCCTTGCCCTAGAGCTTATTATCGCTGCACGGGTGCACCCTCATGTCCAGTTCGGAAACAAGTGCAAAGGAGTGTTGATGATATTTCAATACTAATCACCACCTATGAAGGAACTCACAACCACCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACGACCTCGGCTGCTGCCTCGATGCTCCTCTCGGGCCCTTCCTCCTCCACATCTCGGCCTGGCCTTAACCCTATGCCGATTGGGGCTACGGTCGGGAATCTCCAAGGAATGAACATGTACCTCTCAAACAACACCAATTCAAAGCAATACTACTTGCAAAACTCTTCAATGCTATCTTCTTCTCTCAACCATCCCACAATTACTTTAGATCTCACTTCAAATCCTCCCTCAACTTCCTCCTCTTCTTCTTTATTCCACAAAATCCCATCCACTAATTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGCTCTTCACAATTACCCAATTTCATGTCTTGGAGTAACAACAATAATAGTGGCTACAATCCCAATAATAACCCTCCTTATAATATAAGCAAAAATAGTGCAACTCTTCAGAGTAACATCTATCAAGCCTGCCTTCAACAATTTTCCAAACCTTCAACTCCGCCTCTCCTTCCGCCGCCGCCTCTACCGGACACAATTGCAGCAGCAACGAAGGCAATTACATCGGACCCGAGTTTCCAATCGGCTTTGGCAGCTGCCCTGAGCTCGATTATCGGCGGAAACGGGGGCGAGGCGGTTCAAGCAGCACAAGGAAATGTATGCGTAAACTCGCAACAAGGAAGTATGGGATTAACATGTTCAACCTCCAAGAGTCCTTCTTCATCTCCTGGTGATAGCAGAGATAATAATACCAAGTGA 1647 45.42 MEAEDLPNTDDRVQSRGDEEPVAKQDVLHKVSFMGDLEKPSMEPLSVASASSTWKEEDHHQEQRIKMAKLEMSQVREENQRLKNCLDQMIKDYESLKRQFQDITQKSTQTSASTINNDEVEEADDMVSLTLGRSSKDQGKKKIELDNKDHKMLELKQDCWGSLGVGDRTTNIKTPSVEHIQSPTDSEQAKEEEAGETWPPSKASKGLPAAGEDEISQQNPPKKTRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSTSRPGLNPMPIGATVGNLQGMNMYLSNNTNSKQYYLQNSSMLSSSLNHPTITLDLTSNPPSTSSSSSLFHKIPSTNYPPKYPFTSLDFGSSQLPNFMSWSNNNNSGYNPNNNPPYNISKNSATLQSNIYQACLQQFSKPSTPPLLPPPPLPDTIAAATKAITSDPSFQSALAAALSSIIGGNGGEAVQAAQGNVCVNSQQGSMGLTCSTSKSPSSSPGDSRDNNTK 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30465888 30471153 + Sed0013051.1 Sed12g1936 732892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1936 548 MobiDBLite consensus disorder prediction 1 26 - -
Sed12g1936 548 MobiDBLite consensus disorder prediction 184 198 - -
Sed12g1936 548 FunFam probable WRKY transcription factor 31 222 299 - -
Sed12g1936 548 Pfam WRKY DNA -binding domain 238 296 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1936 548 Coils Coil 65 106 - -
Sed12g1936 548 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1936 548 MobiDBLite consensus disorder prediction 174 223 - -
Sed12g1936 548 Gene3D WRKY domain 222 299 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1936 548 SMART WRKY_cls 237 297 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1936 548 MobiDBLite consensus disorder prediction 42 64 - -
Sed12g1936 548 MobiDBLite consensus disorder prediction 1 27 - -
Sed12g1936 548 SUPERFAMILY WRKY DNA-binding domain 230 298 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed12g1936 548 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 52 504 IPR044810 GO:0003700(InterPro)
Sed12g1936 548 MobiDBLite consensus disorder prediction 523 548 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1827 Sed-Chr1:13445727 Sed12g1936 Sed-Chr12:30465888 1.10E-79 dispersed
Sed10g0589 Sed-Chr10:3914059 Sed12g1936 Sed-Chr12:30465888 7.10E-42 dispersed
Sed12g1936 Sed-Chr12:30465888 Sed14g1331 Sed-Chr14:22164728 9.00E-39 dispersed
Sed13g0515 Sed-Chr13:3508628 Sed12g1936 Sed-Chr12:30465888 3.30E-45 transposed
Sed12g1936 Sed-Chr12:30465888 Sed08g0199 Sed-Chr8:1129753 2.20E-178 wgd
Sed12g1936 Sed-Chr12:30465888 Sed08g2579 Sed-Chr8:38266746 1.60E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40257 PF03106 WRKY 9.70E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1936 - - - 0.0