Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1949 ATGGGTGCCACTTTGAGGCCAAAATGGGAAGCTTTGCCATTTGAAGAATCTTTTCCTCTTTCTCCTCTTCATTTTAGAGGATATGATCATTCTGCATGGGATTGTAATTATTCATTTGGGTTTCAAGATGGCTTTTTTGATGTTATTCCTTTGCTTGAGATTTGCCCAAATGACTGCTTTGTCGAGCCTGTTAGCACTTTTATACCAGAAGATGGTGTTGGGAATATATGGAGTGAAATGGAGGGTTTGGGAATAGGGGTACTTGAGGAGGAGCCACTTTTACATGAAGGAGGTGGAGAAAATGAAAACAAGGGATTATTAGAGAAAAAAGAAGTAGAAATAGGAAGGGGAAAAAGAAAGTGTAGAGAAATGAATAATAGTCCATCAAAAATGCTATCAAGGAAAACAATATCTAAGTATTTTTATATGCCTATAACTCAAGCTGCCAAAGAGTTGAATGTGGGACTCACTCTCTTGAAGAAAAGGTGTAGAGAATTGGGCATAAGAAGATGGCCACATAGGAAGTTGATGAGCCTCCAAGCCCTAATCAAGAATGTTAAGGATCTCCAAAAGGGAGATGGAGAGGGAGAAGGAAATGGAGAGAAGTTGAGCAATGTATTGGAGATATTGGAGAATGAGAAGAAGTTAATGGAAGAGAAACCAGATTTACAATTAGAGGACAATACAAAGAGGCTAAGACAAGCCTGTTTCAAAGCAAACTACAAGAAAAGAAAGTTCTCAGGAATGAATATCAACATGATGAATTCCCAATATTTTTCCACAGGATCAATCACCATTGATGGCCATGAAATTATTTGTAGAGATCTTGTGGATCACGAGGATGACGACGATGAAGACGATGACGAAGAAATGAAATATCTCTTAATGTCGGATTGCGAATTTTCGTCGGGTAGCTATGCAGCTTGTTGA 930 38.49 MGATLRPKWEALPFEESFPLSPLHFRGYDHSAWDCNYSFGFQDGFFDVIPLLEICPNDCFVEPVSTFIPEDGVGNIWSEMEGLGIGVLEEEPLLHEGGGENENKGLLEKKEVEIGRGKRKCREMNNSPSKMLSRKTISKYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQALIKNVKDLQKGDGEGEGNGEKLSNVLEILENEKKLMEEKPDLQLEDNTKRLRQACFKANYKKRKFSGMNINMMNSQYFSTGSITIDGHEIICRDLVDHEDDDDEDDDEEMKYLLMSDCEFSSGSYAAC 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30576783 30579113 + Sed0004547.1 Sed12g1949 732905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1949 309 ProSiteProfiles RWP-RK domain profile. 115 200 IPR003035 -
Sed12g1949 309 PANTHER PROTEIN RKD4 127 250 IPR044607 GO:0003700(InterPro)
Sed12g1949 309 Coils Coil 200 220 - -
Sed12g1949 309 Pfam RWP-RK domain 132 179 IPR003035 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1949 Sed-Chr12:30576783 Sed13g0052 Sed-Chr13:326974 1.30E-26 dispersed
Sed10g1069 Sed-Chr10:9758527 Sed12g1949 Sed-Chr12:30576783 3.20E-18 transposed
Sed12g1949 Sed-Chr12:30576783 Sed08g0215 Sed-Chr8:1257342 1.70E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40262 PF02042 RWP-RK 4.10E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1949 - - - 0.0