Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1949 ATGGGTGCCACTTTGAGGCCAAAATGGGAAGCTTTGCCATTTGAAGAATCTTTTCCTCTTTCTCCTCTTCATTTTAGAGGATATGATCATTCTGCATGGGATTGTAATTATTCATTTGGGTTTCAAGATGGCTTTTTTGATGTTATTCCTTTGCTTGAGATTTGCCCAAATGACTGCTTTGTCGAGCCTGTTAGCACTTTTATACCAGAAGATGGTGTTGGGAATATATGGAGTGAAATGGAGGGTTTGGGAATAGGGGTACTTGAGGAGGAGCCACTTTTACATGAAGGAGGTGGAGAAAATGAAAACAAGGGATTATTAGAGAAAAAAGAAGTAGAAATAGGAAGGGGAAAAAGAAAGTGTAGAGAAATGAATAATAGTCCATCAAAAATGCTATCAAGGAAAACAATATCTAAGTATTTTTATATGCCTATAACTCAAGCTGCCAAAGAGTTGAATGTGGGACTCACTCTCTTGAAGAAAAGGTGTAGAGAATTGGGCATAAGAAGATGGCCACATAGGAAGTTGATGAGCCTCCAAGCCCTAATCAAGAATGTTAAGGATCTCCAAAAGGGAGATGGAGAGGGAGAAGGAAATGGAGAGAAGTTGAGCAATGTATTGGAGATATTGGAGAATGAGAAGAAGTTAATGGAAGAGAAACCAGATTTACAATTAGAGGACAATACAAAGAGGCTAAGACAAGCCTGTTTCAAAGCAAACTACAAGAAAAGAAAGTTCTCAGGAATGAATATCAACATGATGAATTCCCAATATTTTTCCACAGGATCAATCACCATTGATGGCCATGAAATTATTTGTAGAGATCTTGTGGATCACGAGGATGACGACGATGAAGACGATGACGAAGAAATGAAATATCTCTTAATGTCGGATTGCGAATTTTCGTCGGGTAGCTATGCAGCTTGTTGA 930 38.49 MGATLRPKWEALPFEESFPLSPLHFRGYDHSAWDCNYSFGFQDGFFDVIPLLEICPNDCFVEPVSTFIPEDGVGNIWSEMEGLGIGVLEEEPLLHEGGGENENKGLLEKKEVEIGRGKRKCREMNNSPSKMLSRKTISKYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQALIKNVKDLQKGDGEGEGNGEKLSNVLEILENEKKLMEEKPDLQLEDNTKRLRQACFKANYKKRKFSGMNINMMNSQYFSTGSITIDGHEIICRDLVDHEDDDDEDDDEEMKYLLMSDCEFSSGSYAAC 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30576783 30579113 + Sed0004547.1 Sed12g1949 732905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1949 309 ProSiteProfiles RWP-RK domain profile. 115 200 IPR003035 -
Sed12g1949 309 PANTHER PROTEIN RKD4 127 250 IPR044607 GO:0003700(InterPro)
Sed12g1949 309 Coils Coil 200 220 - -
Sed12g1949 309 Pfam RWP-RK domain 132 179 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1949 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1949 Sed-Chr12:30576783 Sed13g0052 Sed-Chr13:326974 1.30E-26 dispersed
Sed10g1069 Sed-Chr10:9758527 Sed12g1949 Sed-Chr12:30576783 3.20E-18 transposed
Sed12g1949 Sed-Chr12:30576783 Sed08g0215 Sed-Chr8:1257342 1.70E-87 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1949 . 118 256 AtRKD Transcription Factor Family AT1G18790 66.9 4.3e-42 169.5
Sed08g0215 . 127 254 AtRKD Transcription Factor Family AT1G18790 65.2 3.8e-38 156.4
Sed08g0215 . 137 287 AtRKD Transcription Factor Family AT1G74480 55.4 1.4e-38 157.9
Sed12g1949 . 132 245 AtRKD Transcription Factor Family AT1G74480 71.1 3.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40262 PF02042 RWP-RK 4.10E-21 No_clan Sed TF