Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1954 ATGAAAGCTTTTTCTTATTCCTCTATTCTTAATTTCCTCATCTTTATGATTTTCTTGTTGTTTCAAAAATCTGTTTGTTCTATGAATGATACTTCAACGCCAAAAGGGTACCTTTGCAATAATGATTCTCTCAACTCATGTGAATCATACCTTTTGACCTTGAGATCTCTCCCCAACTCTTACAATTCTTACCCCAAAATCACATTTGGGAGCAGTCGTTTGTTTGGTACCGTCGTTTATTGTGAATGTGTGGGTCATTTTTTTCGGAGTTCGTATGATCATACTATTGAGAGCGGTGATAGCTATGAAAAAATAGTGAATGATTTTCAAGGCATGACGAGTGTGAATTACTTAGAATTAAGGCGTGAAAATGACGACTTAACAATGAATAGTAGTTGTATTGGTAGAGAAATTGTAGTTCCTTTGCGATGTGCTTGTCTTACCGAAGCTCAACGAGCAAAGGGCATTGAGTCCATGGGTTTGTATGTGCTACAACCCAATGATACCAATATTGGATCGGTTGCCATGAATTTTGGGGTTCAAAAAGAAGCCATCTTGGAAGCAAACAACCTTTCCAATTCAACCCTCTTTCTTCCCCCCCTAACACTTATTTTGATTCCGTTCAGCTCAAATGATTTCTGCAGACTATTTGGCTGCCGCACTTTTACGTTTTGGGACGGACTTGGAGTTTATCATCCATTGTTCTTCATAATAACAGGTGATCTATGCCTTTCTCTTGTGATTTTATTAAATTGGGGACATCAACTTTATTCTAAGAAACAAAAGCGCAGACTTGGTAAGATAAAGTTTTTCAAGCAAAATGGTGGCCACTTATTACAACAAAAACTGCTTGAAGAAAGTTGTGAGAGAGTGAAAATATTTACACAAGAAGAACTTGAACAAGCCACTGACAACTACAATCAAAGTAGATTTCTTGGCCAAGGAGGTTATGGCACTGTTTACAAAGGGATACTCCAAGACAACACCATTGTTGCAATCAAAAGATCGAAGCAAATCGAAACAACTTGGATCGAACAATTCATCAACGAAGTTATCGTCCTTTCTCAAGTTAACCACAGAAATATTGTTAAGCTTCTCGGTTGTTGTTTAGAAACAGAGTTCCCTTTGCTGGTTTATGAATTTGTTTCTAATGGGACTCTCTCTCACCATATTCACAAGCAATGTCTCGAAGACTCGCCTTCTCTTTCTTGGAAAAACCGTCTCGATATCGCTTCTGAAGTCGCGGGAGCTATTTCTTACATGCATTCTGCAGCTTCGATTCCTATTTTTCATAGAGATATCAAGTCTTTGAACATACTTTTGGATGATCGTTACTGTCCAAAGATTTCTGATTTTGGAACATCAAGATTTGTGTCTTGTGATCAATCTCATTTGACAACAAAGGTGCTTGGAACTTTTGGGCACATAGATCCCGAATACTTCAGGTCAAGTCAATTCACGGAAAAGAGTGACGTGTATAGCTTTGGAGTATTGATGGTAGAGCTTTTAACTGGGAAGTTGCCTGTGAGTTTTGCGGCACAAAATGATGGAGGGAATCTACTAGACTACTTCATTTTATTGGGAGGGAGTAATCAATTTGATGAGATTCTAGATGTTACCGTTGCCAAGGAAGAAAATAGGGAGGTTGTTAATAATGTTGGAGAACTTGCCATAAAATGTTTGAGACCAAATGGGAAAGAAAGGCCTACAATGAAGCAAGTATATTTGGAACTTGAAGGATTGAGAAAGTCACAATCTTGTTTTGAAATTATGGATGAAAGTCATTGTTCAACAACTTTTTCACTGCAATCCTACGAGATTAGTGATGAAGAGCTAATTCCAAGATGA 1848 37.82 MKAFSYSSILNFLIFMIFLLFQKSVCSMNDTSTPKGYLCNNDSLNSCESYLLTLRSLPNSYNSYPKITFGSSRLFGTVVYCECVGHFFRSSYDHTIESGDSYEKIVNDFQGMTSVNYLELRRENDDLTMNSSCIGREIVVPLRCACLTEAQRAKGIESMGLYVLQPNDTNIGSVAMNFGVQKEAILEANNLSNSTLFLPPLTLILIPFSSNDFCRLFGCRTFTFWDGLGVYHPLFFIITGDLCLSLVILLNWGHQLYSKKQKRRLGKIKFFKQNGGHLLQQKLLEESCERVKIFTQEELEQATDNYNQSRFLGQGGYGTVYKGILQDNTIVAIKRSKQIETTWIEQFINEVIVLSQVNHRNIVKLLGCCLETEFPLLVYEFVSNGTLSHHIHKQCLEDSPSLSWKNRLDIASEVAGAISYMHSAASIPIFHRDIKSLNILLDDRYCPKISDFGTSRFVSCDQSHLTTKVLGTFGHIDPEYFRSSQFTEKSDVYSFGVLMVELLTGKLPVSFAAQNDGGNLLDYFILLGGSNQFDEILDVTVAKEENREVVNNVGELAIKCLRPNGKERPTMKQVYLELEGLRKSQSCFEIMDESHCSTTFSLQSYEISDEELIPR 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30594098 30596750 - Sed0016434.1 Sed12g1954 732910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1954 615 SMART serkin_6 306 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1954 615 Pfam LysM domain 162 197 IPR018392 -
Sed12g1954 615 SUPERFAMILY Protein kinase-like (PK-like) 289 578 IPR011009 -
Sed12g1954 615 FunFam Wall-associated receptor kinase 2 278 381 - -
Sed12g1954 615 ProSiteProfiles Protein kinase domain profile. 306 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1954 615 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Sed12g1954 615 Gene3D Transferase(Phosphotransferase) domain 1 382 603 - -
Sed12g1954 615 Pfam Protein kinase domain 306 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1954 615 ProSiteProfiles LysM domain profile. 160 206 IPR018392 -
Sed12g1954 615 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 78 585 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Sed12g1954 615 FunFam Wall-associated receptor kinase 2 382 599 - -
Sed12g1954 615 Gene3D Phosphorylase Kinase; domain 1 278 381 - -
Sed12g1954 615 CDD STKc_IRAK 312 581 - -
Sed12g1954 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g1236 Sed-Chr8:25491710 Sed12g1954 Sed-Chr12:30594098 2.40E-172 dispersed
Sed12g0658 Sed-Chr12:3913349 Sed12g1954 Sed-Chr12:30594098 4.30E-126 dispersed
Sed12g1954 Sed-Chr12:30594098 Sed14g0522 Sed-Chr14:5123961 6.10E-68 dispersed
Sed12g1954 Sed-Chr12:30594098 Sed02g0586 Sed-Chr2:43527057 1.80E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80022 PF00069 Pkinase 3.70E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1954 - - - 0.0