Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1972 ATGGGTGGAGATTTCTCCATCTCCTCCATCTTCCTCCTCATCGCCTTCGCCATTTCCGCCGCCCAAAACCCATCATCATCCCTTCCGTTCTCCCCTCGCGACAATTACCTCATCGACTGCGGCTCGCCGGCGCAAACCCGCCTCTCCGACGGCCGGATCTTCAAATCCGACCGCGAATCCTCCTCTCTCCTCTCCACCGATGAAGACATCCAAATCTCCGCCGATTCCGTTCCCCCAAACGCCGCCGTTTCCCCGCTCTCTTGGTCTCTTCCCCTGCTTCTCACCGCCAGAATCTTCGCCGGAAATTCCACCTACACCTTCTTCATCTCCCAGCCCGGCCGCCACTGGATCCGCCTGTACTTTTACCCTCTTCCAAACGCTAATTTCAATTTCTCCCATTCCGTCTTCACCGTCACCGCCGATAAATTCGTCCTCCTTCAAGATTTCTCAATCGAACCCACAAACCCTAAAATCCTCTTCAAGGAATACCTAATCAACATCACGGAAAATCGATTCTCGCTTCAGTTCAAACCCAAGGAGGATTCACCCGCTTTCGCCTTCGTCAACGCCATCGAAATCGTCTCCGCCCCAGATCCCCTGTTCTCCGATTCCGCCACCTCTGTTTTTCCGGCGGGTTTCTTCCATGGATTGTCGAACTACGCTTTACAAATCTGCTACCGAATCAACGTCGGTGGACCGGAGATCGTTCCGGAGAACGATACGCTGTCGAGAACGTGGGAATCGGGTGATTCTTACAACACATTTCCAAAGGATTCTACCAAAGTTTCGGTGGATTTGAACTCTGTTAAATACCCCGGCGAGGAATTTACGCCGCTGATTGCTCCGAGTTCGGTTTACGCGACGGCGGAGCATTCGGAGTCACATGTGATGTTCAATTTGAGTTGGAGTTTTGATGTGGAACAGAGTTATTCGTATTTGATTCGACTGCATTTTTGTGATATTGTGAGCAAAGTTCTTAATAGTTTGTATTTTGATGTGTACGTGAATGGGATGATTGGTATTGATGATCTTGATCTCTCGCACCTCACTGGCAAACTTGCAACTCCTTATTATAGGGATCTTGTGCTCAATGCATCTGATCTCAAGAACAATGCCATTTTAATTCAGGTCGGTCCATCGAAGCTCGATTTGGGGCTACAAGACGCGATCCTAAACGGGGTGGAGATAATGAAGATGAGCAACGAGGCACAGAGCTTGGATGGGTTGTTTACGGTGGATGGAACATGCATGGAAGGGGGATTGGTATCCATGAAGACTGTAGCAATGGTGGGATTGGGAATGGGAGTAATAATAGTGATAGTCATAATTGGAGTAATGATCGTGAAATGGCAGAAAAAGCCTTTATTGGAGAAGAAGAACAGTTTATCACCATGGCTTCTTCCATTGAATTCAACTAAATCTGCCTTATCCAGGAGAAGCAGTTCCAGTTCAAGATCATCAAGATCAAGAACAAGATCAAGCGTTTATGGCTCTCGCATCTTCTCGAATGTTGGTCTTGGTCGTTTCTTCTCTTTCAATGAGTTACAGGCAGCAACGCATAATTTCGAGGAGAAATCAGTGATCGGATTCGGAGGGTTCGGCAAAGTATACATCGGAGCATTGGAAGATGGAGTCAAAGTCGCCATCAAACGAGGAAACCCCACCTCCGATCAAGGCATCAACGAATTCCGAACCGAAATCGAAATGCTCTCCAAGCTCCGCCACCGCCATCTCGTTTCCCTCGTCGGATTCTGCGACGAGCAGTCGGAGATGATCCTCGTCTACGAGTACATGGCCAACGGCCCCTTTCGCGACCATTTGTACGGCTCCAACCTCCCCCCACTGCCCTGGACGCAGCGCCTCCAGATCTGCATCGGCGCCGCCCGTGGCCTGCACTACCTCCACACCGGCGCCGCGCAGGGCATCATCCACCGCGATGTGAAGACGACCAACATTCTTCTGGACGAGAATTTCGTCGCCAAAGTGGCGGACTTCGGGCTTTCGAGAGCGGCGCCTTCGTTGGATCAGACTCATGTGAGCACTGCCGTGAAAGGGAGTTTTGGGTACCTTGATCCGGAGTATTTCAGAAGCCAGCAATTGACTGAGAAATCTGATGTTTACTCTTTTGGTGTTGTGCTGTTTGAGGCTCTCTGTGCAAGACAAGTGATTAATCCGAAGTTGCCGCGCGATCAGGTGGTTTTAGCAGAGTGGGCAATGAAGAGTTATAAAAAAAGAAAGCTAGAGATGATAATTGATCCTCATATTAGCAGCTCAATTGTACAGGGGTCACTCAAGATATTTGTGGAAGCAGCAGAGAAATGCTTGGCTGAATATGGCGCCGATAGGCCAAACATGGGCGATGTGCTATGGAACTTAGAATATGCTTTGCAGCTACAAGAGGCAGTGTCCGAACTCGACGACCCCGAGGAAGACAAATGCGAAGGCCTCGGGGCTTTAGACAAACTAAACGACAATGAACCAAAAGGAAAAGCCAGTACTTCTGTAAGTAATGATACTTCTGAAATCCCAGTCAGTGGTTCTCTGTTTTCAGAGAATCCAAGTTTTCAGGGAAGATGA 2577 49.13 MGGDFSISSIFLLIAFAISAAQNPSSSLPFSPRDNYLIDCGSPAQTRLSDGRIFKSDRESSSLLSTDEDIQISADSVPPNAAVSPLSWSLPLLLTARIFAGNSTYTFFISQPGRHWIRLYFYPLPNANFNFSHSVFTVTADKFVLLQDFSIEPTNPKILFKEYLINITENRFSLQFKPKEDSPAFAFVNAIEIVSAPDPLFSDSATSVFPAGFFHGLSNYALQICYRINVGGPEIVPENDTLSRTWESGDSYNTFPKDSTKVSVDLNSVKYPGEEFTPLIAPSSVYATAEHSESHVMFNLSWSFDVEQSYSYLIRLHFCDIVSKVLNSLYFDVYVNGMIGIDDLDLSHLTGKLATPYYRDLVLNASDLKNNAILIQVGPSKLDLGLQDAILNGVEIMKMSNEAQSLDGLFTVDGTCMEGGLVSMKTVAMVGLGMGVIIVIVIIGVMIVKWQKKPLLEKKNSLSPWLLPLNSTKSALSRRSSSSSRSSRSRTRSSVYGSRIFSNVGLGRFFSFNELQAATHNFEEKSVIGFGGFGKVYIGALEDGVKVAIKRGNPTSDQGINEFRTEIEMLSKLRHRHLVSLVGFCDEQSEMILVYEYMANGPFRDHLYGSNLPPLPWTQRLQICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSRAAPSLDQTHVSTAVKGSFGYLDPEYFRSQQLTEKSDVYSFGVVLFEALCARQVINPKLPRDQVVLAEWAMKSYKKRKLEMIIDPHISSSIVQGSLKIFVEAAEKCLAEYGADRPNMGDVLWNLEYALQLQEAVSELDDPEEDKCEGLGALDKLNDNEPKGKASTSVSNDTSEIPVSGSLFSENPSFQGR 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30709941 30716082 + Sed0018236.1 Sed12g1972 732928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1972 858 SUPERFAMILY Protein kinase-like (PK-like) 500 793 IPR011009 -
Sed12g1972 858 MobiDBLite consensus disorder prediction 812 827 - -
Sed12g1972 858 MobiDBLite consensus disorder prediction 828 858 - -
Sed12g1972 858 FunFam Receptor-like protein kinase FERONIA 598 812 - -
Sed12g1972 858 MobiDBLite consensus disorder prediction 805 858 - -
Sed12g1972 858 Pfam Malectin-like domain 38 398 IPR024788 -
Sed12g1972 858 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524(InterPro)
Sed12g1972 858 Pfam Protein tyrosine and serine/threonine kinase 525 732 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1972 858 ProSiteProfiles Protein kinase domain profile. 522 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1972 858 SMART serkin_6 522 795 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed12g1972 858 FunFam Putative receptor-like protein kinase 35 197 - -
Sed12g1972 858 Gene3D Phosphorylase Kinase; domain 1 480 597 - -
Sed12g1972 858 FunFam receptor-like protein kinase FERONIA 482 597 - -
Sed12g1972 858 Gene3D Transferase(Phosphotransferase) domain 1 598 814 - -
Sed12g1972 858 CDD STKc_IRAK 528 793 - -
Sed12g1972 858 FunFam Receptor-like protein kinase FERONIA 221 401 - -
Sed12g1972 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed12g1972 858 PANTHER OS07G0166700 PROTEIN 510 800 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Sed12g1972 858 Gene3D - 35 197 - -
Sed12g1972 858 Gene3D - 221 401 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g1544 Sed-Chr9:38981033 Sed12g1972 Sed-Chr12:30709941 2.70E-231 dispersed
Sed10g0674 Sed-Chr10:4661593 Sed12g1972 Sed-Chr12:30709941 3.30E-138 dispersed
Sed10g0676 Sed-Chr10:4672633 Sed12g1972 Sed-Chr12:30709941 1.80E-133 dispersed
Sed12g1972 Sed-Chr12:30709941 Sed14g0568 Sed-Chr14:5681470 8.00E-167 dispersed
Sed12g1972 Sed-Chr12:30709941 Sed08g0239 Sed-Chr8:1358785 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80023 PF12819 Malectin_like 9.30E-34 CL0202 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1972 - - - 0.0