Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1974 ATGGCGCTGTTCAGAAGGTTCTTTTACAGGAAGCCGCCGGATCGGCTTCTCGAGATCTCCGAGAGAGTCTATGTGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTAGATGGCATTGTAGCACAGTTGCAGAGCTACTATCCTGATGCTTCTTTCATGGTTTTCAACTTTAGAGAAGGTGATAAGAGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTGATGGACTATCCTCGGCAATATGAGGGATGTCCTTTATTGGCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCGCTGGAAGGTCAACAGAATGTGTTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGCTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTTTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCGTTTAAACCCCCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGACAATTAGGTTCTGATTGGCCTCCATCAGATACACCTCTAGTTTTGGATTGTTTAATTCTTAGAGTTCTACCTCTTTTTAATGGTGGAAAAGGATGTAGGCCTGTTGTACGTGTCTATGGTCAAGACCCCTCAGCACCAGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAGAGGAAACGCATCCGTAACTTCCTACAGGCAGAATGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATTTGGATGAAGATCTAGTACATGAGGAGATGATGTTTAGAGTTATGTTTCACACTACATTTGTTCGATCAAACATCATGGTGCTGAACCGTGATGAAGTTGATATTTTATGGGATGCTAGGGACCAGTTTCCTAAGGACTTCAAAGTTGAGGCACTTTTTTTGGATCCTGATGCTGTTGTTCCCAATCTCACCTCAGCCTTTGATGATGAAGATGGAAATGAAACTGAAGCTGCTTCCCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGCAATGGATGGGCAGGAAGCAAAGGGGTCCAATTATCCTCAAGTGGTCAATCATGTAGACCGTAAAGAAGATTGGAAGGAGGACTTTGATCCTCCTTCATTCCAAGATTGTGCATCTGACGATGGAAATCATAAGCATGATAAGAAATCAGATTTTGATGCAGTAAAGGACATTACTGTCGATGATGTGAAGTACAAGCTGGATGAAAATATATATTCTGATCTTACTGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAACTTCTTGGTTGCTACTAACGTCTTCACTCATGTTTCCCATGAGTTGGTAGATGATGCATACGAGAAATTTGAAGATATAGAAGAAAAAGATGATGGAAGAGATGCTGCACCTGAGAAATTGCAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCTGATGGGGATACGAATTCCAACTCCTTGGTTGCCACTAATGTCCTGACTTATGTTTCCCATGAGTTGGTAGATGATGCATACGAGAAATTTGAAGATGTAGAAGTAAAAAATGATGGAAGAGATACTGCACCTGAGAAATTGGAAAACAAGGTTCTGAAGAAAAAGTTGAGTGCTGATGGGGATATGAATTCGAACTCCTTCTTGGTTGCTACTAATGTCCTGAATCATGTTTCCCATGGGTTGGTAGAGGATGCATACGAGAAATTTGAAGATATAGATGAAATAGATGATGAAAGAGATACTGCACCTGCGAAATTGGAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCCGATGGTTCTGGAAAAAACTCTGAAAAATTGCATGCACCTACCCCCAAAAAGCAGCCTATTTCAAGTGGAAAACCGACCTCTGATATGGTTTTAGCCAAACAGAGAGTCAAACAACAAGAGACTCAAGGTTTGTCTGCAAAACAAGCAAAGCCGAATATAGTGTCTAGGTGGATCCCTCCGAACAAAGGCTCCTATACGAATTCTATGCACGTTTTCTATCCACCTTCAAGATATAACAGTGCTCCCGCTGCTCTGGCAAGTATTGCACCTTCAAAGGATATAAATGAAAATTCCATATCAAAGGCTGCTGCTACCCTTGATTCTCTGGTTTTTACAGATGTATTTAGTGAACAAAAAAATTATGAAGTGGATTCTGTAAGGTCTTCACACTCTGCACTTGGCGAACTCAAGCTTAGCCCACCATCTCCCGTTGAGTCAATTGAGGAGACATATAATTCCTTTGAAACCTTAAAACCACCGCATAGTGATCGGCAACTTGAAGTAACACCTCCCCTACCCACAAGGTCTCCATCTCAACATTTACCATCCTCGCCCGAGGAAAATGTAGTATCTCCTCCACCACCCTCTTCATTGTATCATGCTCCACCACATTCTGTGTCTTTATCACCGCCACCCTTAGTTAACTCATCAAAGGCAGTGATTCCCCCTCCCCCTCCCCCTCCCCCTCCCCATCCTTTCAGTAGGCAGCATAGTGAGATGCTTTTGCCCCATTCTTCTACACAATCATCTGATACGATCCGGACCGTATCATCATCATGGGAGCAAATATACTCTTCTGTTTCTACTGTAATGGTGGATCATTCTATACCTCTGCCATCTCCACCTCCACCTCCCTCAGTGGCCATGCCATCTACATTAAAGAATAATGTAAGTACTTTTCCCATACTTTCCTCGTCACAAAAAGGTATATCACTTTCACCTCCTCCACCTCCACCTCCACCTCCCCCACCCCCACCACCTATTACTTCAGCTACTTCACTTCATGGCGATTCACTGCGTCCGGCTCTATTAATGGATGGTGAATTGCCTTCACCATCACTAGGGAAAGGATTACCTTCAACACCTAAAAAACATGGAGTACCACCCCCGCCACCTCCTCCACCCCCACCTTTCATGTATGGTGCACCACCACCTTCAACGTTTGGAACATCCCTTCCTTTAATTCTTCCCATCCAAAGGGTACCCCTACCACCACCTCCACCCCCTCCAATGCTTGTGGCTCCACCACCGCCACCACCACGACCGCCTTCTATGCATGAGGCTCTTTTGCTACCGACATTTCCACCCCCACCTAAGCGTGGGGCTCCTCCACCGCCACCACCACCAATGCCACCTCTACATGGTGCTCCTCCACCGCCACCTCCACCTCCACCAATGCATGGAAATCCTCCCCCACCACCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCTCCTCCCATGCATGGGGCTCCTCCTGCTCCCCCACCTCCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCACCTCCACCACCTCCACCTCCTCCCATGCATGGGGCTCCTCCTGCTCCCCCACCTCCACCTATTCCCATGTATGGGGCTCATCCACCACCCCCACCCCCGCCTCCTCCCATGCATGGGGCTCCACCACCACCCCCACCTTTTCACATGTGTGGTGTTCCTCCCCCACCGCCACCTCCTCCAATGCTTGGCATTTCTTTCCCATCGCCTGGGGGTGGCAGAGCCCCTCCACCCCCACCTCCCCCACCTGGGGGTGGCAGAGCCCCACCACCCCCACCTCCCCCACCTGGGGGTGGTAGAGCCCCACCACCCCCTGCACCCCCACCTCCCCCACCAGGGGGTGGTAGAGCCCCACCCCCACCTCCTCCACCGGGGGGTGGCAGAGCCCCACCCCCACCTCCCCCTCCTGGGGGTGGCAGAGCTCCAGCACCACCTCCTCCTCCGGGAGGTCATGCTTTAGCCGCACCTAGACCCCCCGGTGGTGGACCTCCTCCGCCTCCACCATTTGGTGCAAAAGGAGCAAATGTTGCACCTCCTGACCCAAGAGGTTTATCTGCTGGAAGGGGGCGTGGGCTTTCACGCTCAAGTGCTACAGCACCCCGAAGGTCCTCCTTAAAGCCTCTACATTGGAGCAAAGTTACAAGGGCTTTGCAAGGGAGCTTGTGGGAAGAATTACAGAGATATGGAGAGCCTCAAATTGCACCAGACTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTTCCCAAACCTGCTGATAAATCGCGAAGAAAGTCAGTTGGATCCAAAACAGACAAAGTTCAACTGGTTGACCTCAGGAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCCGATATGATGGCTGCAGTGCTAGCAATGGACGAATCAGTATTAGATGTTGATCAGGTGGAAAATCTCATAAAGTTTTGTCCTACGAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGATAAGGATAAACTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCGAAGATGAGAGTGTTTTCTTTTAAGATTCAGTTCGGCACTCAGCTATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCGGCATGTGATGAGGTTAGGAATTCGTCCAAACTAAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACAGCAAGGGGTTCTGCGGTTGGCTTCAAATTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTGCGAAGACACCAGCTCTTCTTGATGTTCATTTGGACCTGGGTAGCCTAGAGGTAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAATTTTTCGCAAGGTACATCTGCCTTTTCATACGGTTCTTCTTAAGAACGTCTCTGCACTTTTTACTCTTTCAAACTTTCTTTGA 5088 47.15 MALFRRFFYRKPPDRLLEISERVYVFDCCFSTEVLEEEEYKVYLDGIVAQLQSYYPDASFMVFNFREGDKRSQISDVLTQYDMTVMDYPRQYEGCPLLALEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSRLNPQPSQLRYLQYISRRQLGSDWPPSDTPLVLDCLILRVLPLFNGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKRIRNFLQAECMLVKIDIHCHVQGDVVLECIHLDEDLVHEEMMFRVMFHTTFVRSNIMVLNRDEVDILWDARDQFPKDFKVEALFLDPDAVVPNLTSAFDDEDGNETEAASPEEFFEVEEIFSNAMDGQEAKGSNYPQVVNHVDRKEDWKEDFDPPSFQDCASDDGNHKHDKKSDFDAVKDITVDDVKYKLDENIYSDLTAVKDIAVDDGDMNSNFLVATNVFTHVSHELVDDAYEKFEDIEEKDDGRDAAPEKLQNKVLQKKLSADGDTNSNSLVATNVLTYVSHELVDDAYEKFEDVEVKNDGRDTAPEKLENKVLKKKLSADGDMNSNSFLVATNVLNHVSHGLVEDAYEKFEDIDEIDDERDTAPAKLENKVLQKKLSADGSGKNSEKLHAPTPKKQPISSGKPTSDMVLAKQRVKQQETQGLSAKQAKPNIVSRWIPPNKGSYTNSMHVFYPPSRYNSAPAALASIAPSKDINENSISKAAATLDSLVFTDVFSEQKNYEVDSVRSSHSALGELKLSPPSPVESIEETYNSFETLKPPHSDRQLEVTPPLPTRSPSQHLPSSPEENVVSPPPPSSLYHAPPHSVSLSPPPLVNSSKAVIPPPPPPPPPHPFSRQHSEMLLPHSSTQSSDTIRTVSSSWEQIYSSVSTVMVDHSIPLPSPPPPPSVAMPSTLKNNVSTFPILSSSQKGISLSPPPPPPPPPPPPPPITSATSLHGDSLRPALLMDGELPSPSLGKGLPSTPKKHGVPPPPPPPPPPFMYGAPPPSTFGTSLPLILPIQRVPLPPPPPPPMLVAPPPPPPRPPSMHEALLLPTFPPPPKRGAPPPPPPPMPPLHGAPPPPPPPPPMHGNPPPPPPPPMRGAPPPPPPPPPPMRGAPPPPPPPPPPMHGAPPAPPPPPPPMRGAPPPPPPPPPPPPPPPPMHGAPPAPPPPPIPMYGAHPPPPPPPPPMHGAPPPPPPFHMCGVPPPPPPPPMLGISFPSPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPAPPPPPPGGGRAPPPPPPPGGGRAPPPPPPPGGGRAPAPPPPPGGHALAAPRPPGGGPPPPPPFGAKGANVAPPDPRGLSAGRGRGLSRSSATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPDFDVSELETLFSATVPKPADKSRRKSVGSKTDKVQLVDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDKLGKCEQYFLELMKVPRVESKMRVFSFKIQFGTQLSEFKKSLNTVNSACDEVRNSSKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLAAKTPALLDVHLDLGSLEVATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEIFRKVHLPFHTVLLKNVSALFTLSNFL 1695
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30723772 30745333 - Sed0002250.1 Sed12g1974 732930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1974 1695 MobiDBLite consensus disorder prediction 617 662 - -
Sed12g1974 1695 Gene3D Formin, FH2 domain 1357 1693 IPR042201 -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 1032 1338 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 803 820 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 945 964 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 760 891 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 873 891 - -
Sed12g1974 1695 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 907 1369 - -
Sed12g1974 1695 Coils Coil 1636 1656 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 997 1017 - -
Sed12g1974 1695 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Sed12g1974 1695 Gene3D - 205 336 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 779 793 - -
Sed12g1974 1695 SMART PTEN_C2_2 198 338 IPR014020 -
Sed12g1974 1695 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1359 1695 IPR015425 -
Sed12g1974 1695 PANTHER FORMIN-J 1266 1688 IPR051144 -
Sed12g1974 1695 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 924 944 - -
Sed12g1974 1695 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Sed12g1974 1695 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1372 1689 - -
Sed12g1974 1695 Pfam Formin Homology 2 Domain 1364 1678 IPR015425 -
Sed12g1974 1695 SMART it6_source 805 1695 IPR015425 -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 850 868 - -
Sed12g1974 1695 MobiDBLite consensus disorder prediction 821 843 - -
Sed12g1974 1695 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g2651 Sed-Chr7:41953739 Sed12g1974 Sed-Chr12:30723772 3.90E-26 dispersed
Sed12g1974 Sed-Chr12:30723772 Sed12g1976 Sed-Chr12:30723772 0.00E+00 dispersed
Sed12g1974 Sed-Chr12:30723772 Sed12g1975 Sed-Chr12:30723772 0.00E+00 tandem
Sed01g2329 Sed-Chr1:17594475 Sed12g1974 Sed-Chr12:30723772 6.80E-287 wgd
Sed12g1974 Sed-Chr12:30723772 Sed08g0241 Sed-Chr8:1371158 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1974 K28090 - csv:101215105 969.918