Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g1976 ATGTTTGATTGTTGCTTCTCCACGGAAGTGTTGGAAGAAGAAGAATATAAGGTCTACTTAGATGGCATTGTAGCACAGTTGCAGAGCTACTATCCTGATGCTTCTTTCATGGTTTTCAACTTTAGAGAAGGTGATAAGAGAAGTCAAATTTCTGATGTACTGACTCAGTATGACATGACAGTGATGGACTATCCTCGGCAATATGAGGGATGTCCTTTATTGGCATTGGAGATGATTCACCACTTCCTTCGATCAAGTGAAAGCTGGCTGTCGCTGGAAGGTCAACAGAATGTGTTATTGATGCATTGTGAAAGAGGAGGATGGCCTGTTCTTGCATTCATGCTAGCTGGTCTTCTGCTGTACAGGAAACAATACAGTGGGGAGCAGAAGACTCTTGAAATGGTTTACAAGCAAGCTCCTAAGGAACTTCTCCATCTTTTGTCTCGTTTAAACCCCCAGCCTTCCCAGCTGAGATATCTTCAATACATTTCCAGGAGACAATTAGGTTCTGATTGGCCTCCATCAGATACACCTCTAGTTTTGGATTGTTTAATTCTTAGAGTTCTACCTCTTTTTAATGGTGGAAAAGGATGTAGGCCTGTTGTACGTGTCTATGGTCAAGACCCCTCAGCACCAGCCAATAGAACTTCAAAGCTTTTATTTTCAACATCAATCAAGAGGAAACGCATCCGTAACTTCCTACAGGCAGAATGTATGCTGGTGAAAATTGATATTCATTGCCATGTTCAAGGGGACGTAGTTCTTGAATGCATCCATTTGGATGAAGATCTAGTACATGAGGAGATGATGTTTAGAGTTATGTTTCACACTACATTTGTTCGATCAAACATCATGGTGCTGAACCGTGATGAAGTTGATATTTTATGGGATGCTAGGGACCAGTTTCCTAAGGACTTCAAAGTTGAGGCACTTTTTTTGGATCCTGATGCTGTTGTTCCCAATCTCACCTCAGCCTTTGATGATGAAGATGGAAATGAAACTGAAGCTGCTTCCCCTGAAGAATTTTTTGAGGTTGAAGAGATCTTCAGTAATGCAATGGATGGGCAGGAAGCAAAGGGGTCCAATTATCCTCAAGTGGTCAATCATGTAGACCGTAAAGAAGATTGGAAGGAGGACTTTGATCCTCCTTCATTCCAAGATTGTGCATCTGACGATGGAAATCATAAGCATGATAAGAAATCAGATTTTGATGCAGTAAAGGACATTACTGTCGATGATGTGAAGTACAAGCTGGATGAAAATATATATTCTGATCTTACTGCAGTTAAGGACATTGCTGTGGATGATGGGGATATGAATTCAAACTTCTTGGTTGCTACTAACGTCTTCACTCATGTTTCCCATGAGTTGGTAGATGATGCATACGAGAAATTTGAAGATATAGAAGAAAAAGATGATGGAAGAGATGCTGCACCTGAGAAATTGCAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCTGATGGGGATACGAATTCCAACTCCTTGGTTGCCACTAATGTCCTGACTTATGTTTCCCATGAGTTGGTAGATGATGCATACGAGAAATTTGAAGATGTAGAAGTAAAAAATGATGGAAGAGATACTGCACCTGAGAAATTGGAAAACAAGGTTCTGAAGAAAAAGTTGAGTGCTGATGGGGATATGAATTCGAACTCCTTCTTGGTTGCTACTAATGTCCTGAATCATGTTTCCCATGGGTTGGTAGAGGATGCATACGAGAAATTTGAAGATATAGATGAAATAGATGATGAAAGAGATACTGCACCTGCGAAATTGGAAAACAAGGTTCTGCAGAAAAAGTTGAGTGCCGATGGTTCTGGAAAAAACTCTGAAAAATTGCATGCACCTACCCCCAAAAAGCAGCCTATTTCAAGTGGAAAACCGACCTCTGATATGGTTTTAGCCAAACAGAGAGTCAAACAACAAGAGACTCAAGGTTTGTCTGCAAAACAAGCAAAGCCGAATATAGTGTCTAGGTGGATCCCTCCGAACAAAGGCTCCTATACGAATTCTATGCACGTTTTCTATCCACCTTCAAGATATAACAGTGCTCCCGCTGCTCTGGCAAGTATTGCACCTTCAAAGGATATAAATGAAAATTCCATATCAAAGGCTGCTGCTACCCTTGATTCTCTGGTTTTTACAGATGTATTTAGTGAACAAAAAAATTATGAAGTGGATTCTGTAAGGTCTTCACACTCTGCACTTGGCGAACTCAAGCTTAGCCCACCATCTCCCGTTGAGTCAATTGAGGAGACATATAATTCCTTTGAAACCTTAAAACCACCGCATAGTGATCGGCAACTTGAAGTAACACCTCCCCTACCCACAAGGTCTCCATCTCAACATTTACCATCCTCGCCCGAGGAAAATGTAGTATCTCCTCCACCACCCTCTTCATTGTATCATGCTCCACCACATTCTGTGTCTTTATCACCGCCACCCTTAGTTAACTCATCAAAGGCAGTGATTCCCCCTCCCCCTCCCCCTCCCCCTCCCCATCCTTTCAGTAGGCAGCATAGTGAGATGCTTTTGCCCCATTCTTCTACACAATCATCTGATACGATCCGGACCGTATCATCATCATGGGAGCAAATATACTCTTCTGTTTCTACTGTAATGGTGGATCATTCTATACCTCTGCCATCTCCACCTCCACCTCCCTCAGTGGCCATGCCATCTACATTAAAGAATAATGTAAGTACTTTTCCCATACTTTCCTCGTCACAAAAAGGTATATCACTTTCACCTCCTCCACCTCCACCTCCACCTCCCCCACCCCCACCACCTATTACTTCAGCTACTTCACTTCATGGCGATTCACTGCGTCCGGCTCTATTAATGGATGGTGAATTGCCTTCACCATCACTAGGGAAAGGATTACCTTCAACACCTAAAAAACATGGAGTACCACCCCCGCCACCTCCTCCACCCCCACCTTTCATGTATGGTGCACCACCACCTTCAACGTTTGGAACATCCCTTCCTTTAATTCTTCCCATCCAAAGGGTACCCCTACCACCACCTCCACCCCCTCCAATGCTTGTGGCTCCACCACCGCCACCACCACGACCGCCTTCTATGCATGAGGCTCTTTTGCTACCGACATTTCCACCCCCACCTAAGCGTGGGGCTCCTCCACCGCCACCACCACCAATGCCACCTCTACATGGTGCTCCTCCACCGCCACCTCCACCTCCACCAATGCATGGAAATCCTCCCCCACCACCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCTCCTCCCATGCATGGGGCTCCTCCTGCTCCCCCACCTCCACCTCCTCCAATGCGTGGGGCTCCTCCCCCTCCCCCACCTCCACCACCTCCACCACCTCCACCTCCTCCCATGCATGGGGCTCCTCCTGCTCCCCCACCTCCACCTATTCCCATGTATGGGGCTCATCCACCACCCCCACCCCCGCCTCCTCCCATGCATGGGGCTCCACCACCACCCCCACCTTTTCACATGTGTGGTGTTCCTCCCCCACCGCCACCTCCTCCAATGCTTGGCATTTCTTTCCCATCGCCTGGGGGTGGCAGAGCCCCTCCACCCCCACCTCCCCCACCTGGGGGTGGCAGAGCCCCACCACCCCCACCTCCCCCACCTGGGGGTGGTAGAGCCCCACCACCCCCTGCACCCCCACCTCCCCCACCAGGGGGTGGTAGAGCCCCACCCCCACCTCCTCCACCGGGGGGTGGCAGAGCCCCACCCCCACCTCCCCCTCCTGGGGGTGGCAGAGCTCCAGCACCACCTCCTCCTCCGGGAGGTCATGCTTTAGCCGCACCTAGACCCCCCGGTGGTGGACCTCCTCCGCCTCCACCATTTGGTGCAAAAGGAGCAAATGTTGCACCTCCTGACCCAAGAGGTTTATCTGCTGGAAGGGGGCGTGGGCTTTCACGCTCAAGTGCTACAGCACCCCGAAGGTCCTCCTTAAAGCCTCTACATTGGAGCAAAGTTACAAGGGCTTTGCAAGGGAGCTTGTGGGAAGAATTACAGAGATATGGAGAGCCTCAAATTGCACCAGACTTTGATGTGTCTGAGTTAGAGACTCTCTTTTCTGCAACTGTTCCCAAACCTGCTGATAAATCGCGAAGAAAGTCAGTTGGATCCAAAACAGACAAAGTTCAACTGGTTGACCTCAGGAGAGCTAACAACACTGAAATTATGCTCACCAAAGTAAAGATGCCACTTCCCGATATGATGGCTGCAGTGCTAGCAATGGACGAATCAGTATTAGATGTTGATCAGGTGGAAAATCTCATAAAGTTTTGTCCTACGAAAGAGGAGATGGAACTTTTGAAGGGATACACTGGTGATAAGGATAAACTTGGAAAGTGTGAACAGTATTTTTTGGAGCTGATGAAAGTGCCTCGAGTAGAGTCGAAGATGAGAGTGTTTTCTTTTAAGATTCAGTTCGGCACTCAGCTATCAGAATTTAAGAAGAGTTTAAATACTGTCAACTCGGCATGTGATGAGGTTAGGAATTCGTCCAAACTAAAGGAGATTATGAAGAAAATTCTTTATCTGGGGAATACACTGAATCAAGGAACAGCAAGGGGTTCTGCGGTTGGCTTCAAATTGGACAGTCTTTTAAAGCTTGCTGATACACGTGCTTCTAATAATAAGATGACGCTCATGCATTATCTTTGCAAGGTCCTTGCTGCGAAGACACCAGCTCTTCTTGATGTTCATTTGGACCTGGGTAGCCTAGAGGTAGCAACCAAGATACAATTGAAGTCTTTAGCAGAAGAAATGCAAGCTATAATTAAGGGGTTAGAAAAGGTCAGGCAGGAGCTTGTTGCTTCTGAAAGTGATGGCCCAGTCTCTGAAATTTTTCGCAAGGTACATCTGCCTTTTCATACGGTTCTTCTTAAGAACGTCTCTGCACTTTTTACTCTTTCAAACTTTCTTTGA 5016 47.05 MFDCCFSTEVLEEEEYKVYLDGIVAQLQSYYPDASFMVFNFREGDKRSQISDVLTQYDMTVMDYPRQYEGCPLLALEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKELLHLLSRLNPQPSQLRYLQYISRRQLGSDWPPSDTPLVLDCLILRVLPLFNGGKGCRPVVRVYGQDPSAPANRTSKLLFSTSIKRKRIRNFLQAECMLVKIDIHCHVQGDVVLECIHLDEDLVHEEMMFRVMFHTTFVRSNIMVLNRDEVDILWDARDQFPKDFKVEALFLDPDAVVPNLTSAFDDEDGNETEAASPEEFFEVEEIFSNAMDGQEAKGSNYPQVVNHVDRKEDWKEDFDPPSFQDCASDDGNHKHDKKSDFDAVKDITVDDVKYKLDENIYSDLTAVKDIAVDDGDMNSNFLVATNVFTHVSHELVDDAYEKFEDIEEKDDGRDAAPEKLQNKVLQKKLSADGDTNSNSLVATNVLTYVSHELVDDAYEKFEDVEVKNDGRDTAPEKLENKVLKKKLSADGDMNSNSFLVATNVLNHVSHGLVEDAYEKFEDIDEIDDERDTAPAKLENKVLQKKLSADGSGKNSEKLHAPTPKKQPISSGKPTSDMVLAKQRVKQQETQGLSAKQAKPNIVSRWIPPNKGSYTNSMHVFYPPSRYNSAPAALASIAPSKDINENSISKAAATLDSLVFTDVFSEQKNYEVDSVRSSHSALGELKLSPPSPVESIEETYNSFETLKPPHSDRQLEVTPPLPTRSPSQHLPSSPEENVVSPPPPSSLYHAPPHSVSLSPPPLVNSSKAVIPPPPPPPPPHPFSRQHSEMLLPHSSTQSSDTIRTVSSSWEQIYSSVSTVMVDHSIPLPSPPPPPSVAMPSTLKNNVSTFPILSSSQKGISLSPPPPPPPPPPPPPPITSATSLHGDSLRPALLMDGELPSPSLGKGLPSTPKKHGVPPPPPPPPPPFMYGAPPPSTFGTSLPLILPIQRVPLPPPPPPPMLVAPPPPPPRPPSMHEALLLPTFPPPPKRGAPPPPPPPMPPLHGAPPPPPPPPPMHGNPPPPPPPPMRGAPPPPPPPPPPMRGAPPPPPPPPPPMHGAPPAPPPPPPPMRGAPPPPPPPPPPPPPPPPMHGAPPAPPPPPIPMYGAHPPPPPPPPPMHGAPPPPPPFHMCGVPPPPPPPPMLGISFPSPGGGRAPPPPPPPPGGGRAPPPPPPPPGGGRAPPPPAPPPPPPGGGRAPPPPPPPGGGRAPPPPPPPGGGRAPAPPPPPGGHALAAPRPPGGGPPPPPPFGAKGANVAPPDPRGLSAGRGRGLSRSSATAPRRSSLKPLHWSKVTRALQGSLWEELQRYGEPQIAPDFDVSELETLFSATVPKPADKSRRKSVGSKTDKVQLVDLRRANNTEIMLTKVKMPLPDMMAAVLAMDESVLDVDQVENLIKFCPTKEEMELLKGYTGDKDKLGKCEQYFLELMKVPRVESKMRVFSFKIQFGTQLSEFKKSLNTVNSACDEVRNSSKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLADTRASNNKMTLMHYLCKVLAAKTPALLDVHLDLGSLEVATKIQLKSLAEEMQAIIKGLEKVRQELVASESDGPVSEIFRKVHLPFHTVLLKNVSALFTLSNFL 1671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30723772 30745333 - Sed0002250.3 Sed12g1976 732932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g1976 1671 ProSiteProfiles C2 tensin-type domain profile. 176 315 IPR014020 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 826 844 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 593 638 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 1008 1314 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 921 940 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 736 867 - -
Sed12g1976 1671 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 24 164 IPR029021 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 779 796 - -
Sed12g1976 1671 Pfam Formin Homology 2 Domain 1340 1654 IPR015425 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 849 867 - -
Sed12g1976 1671 Gene3D Formin, FH2 domain 1333 1669 IPR042201 -
Sed12g1976 1671 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1348 1665 - -
Sed12g1976 1671 Gene3D Protein tyrosine phosphatase superfamily 2 180 IPR029021 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 883 1345 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 973 993 - -
Sed12g1976 1671 Coils Coil 1612 1632 - -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 755 769 - -
Sed12g1976 1671 SMART PTEN_C2_2 174 314 IPR014020 -
Sed12g1976 1671 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1335 1671 IPR015425 -
Sed12g1976 1671 PANTHER FORMIN-J 2 844 IPR051144 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 900 920 - -
Sed12g1976 1671 Gene3D - 181 312 - -
Sed12g1976 1671 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 177 312 IPR035892 -
Sed12g1976 1671 Pfam C2 domain of PTEN tumour-suppressor protein 175 312 IPR014020 -
Sed12g1976 1671 SMART it6_source 781 1671 IPR015425 -
Sed12g1976 1671 MobiDBLite consensus disorder prediction 797 819 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g1974 Sed-Chr12:30723772 Sed12g1976 Sed-Chr12:30723772 0.00E+00 dispersed
Sed12g1976 Sed-Chr12:30723772 Sed13g1968 Sed-Chr13:24532389 6.70E-194 dispersed
Sed12g1975 Sed-Chr12:30723772 Sed12g1976 Sed-Chr12:30723772 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g1976 K28090 - csv:101215105 920.613