Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2011 ATGGCGAATACACCAACTCCGGCCGGGATTTCCAACATTTTGGCCAATCCCTCGCCGGATTCGTCCTCCGATGTCCCTCACGTCGTTCTTCAGGTCCTCGATCTCAAGGCGACCGGAAATCGCTACATGTTTACTGCTTCTGATGGAGATATGAAGTTGAAGGCTATTCTTCCATCAAACCTGACGTCCGAGGTCATATCTGGAAACATTCAAAATTTGGGTCTAGTTCGTGTTCTTGATTATTCTCTCAATGACATCCCGAACAAGCCAGAAAAGTATTTAATTGTGACGAAATGTGAGGTGGTTTCTCCTGCTCTAGAAAAGGAGGTAAGAACTGAGATTAAGAAAGAGGAAGCAAGTATTGTTTTGAAACCTAAGCAAGAGTTCGATGATAAGAGTGCTATTAGTGCTGGAGCTGGCATTCTTTTAAAGCCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTACTAATATGGCACCACCTGCACGGATGTCCATGACAAGGCGAGTTCATCCACTTGTTTACTTAAATCCTTATCAAGGAGATTGGACCATCAAAGTCCATGTTACAGACAAGGGAAACTTGCGTACGTACAAGAATGCTCAAGGAGAAGGGTGTGTTTTCAATGTGGTGTTGACAGATGAAGATGGCACTCAAATACAGGCAACGATGTTTAATGAAGCTGCAAGGAAGTTTTATGAGAAATTTGCACTAGGCAAAGTTTATTACATTTCCAAAGGAACTTTGAAAGTTGCTAACAAGAGATTTAAGACAGTTCAAAATGATTATGAAATGACTTTAAATGTGAATTCTCAAGTGGACGAGGTCAGCAATGAAGCTGTTTTCATTCCTGAAACGAAATTTAATTTTGTCAAGATTGACATGTTGGGTCCTCACGTGAACGGAAAAGAGCTTGTTGATGTTATTGGAGTTGTTCAAAGTGTTTCTCCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATATAACCATTGCCGACGAGACGAAAAAGACAGTTGTAATATCTTTGTGGAATGATCTTGCGACCACTTTGGGGCAGGAGTTACTTGACATTGCCGATCAATCTCCTATAATTGCAGTGAAGTATCTTAGAGTTGGAGATTTTCAAGGTGTATCTTTGTCAACAATTAGTAGGAGCTCAATTTTAATCAATCCAGACATAAAGGAAGCACATCAGTTGAGATCCTGGTACGACTCTGAAGGAAAAGCCATATCCATGGCTTCTGTCAGCTCTGGCCTGAGCCCTTTGTCCAAGAGTGGGTCGAGGTCCATGTACTCCGACCGGGTTTCCCTGTCTCATATACTCCAAAACAAATCTTTGGGAGAAGAAAAGCCCATGTTCTTCAGCATTAGAGCACATGTCAGCTTTATCAAGCCTGACCAAACAATGTGGTATCGGGCATGTAAAACGTGCAACAAGAAGGTGACCGAAGCCATTGGATCTGGATATTGGTGCGAAAGCTGCCAGAAAAACGATGAAGAATGCAGTTTACGGTACATAATGGCTGTGAGAGTTTCTGATGCAAGTGGTGAAGGCTGGATCTCTACATTCAATGATGAAGCAGAGAGGATTATAGGGTGCTCAGCTGATGAGCTCGAACAGCTCAAATCACAGATTGGAGAGGATTCATATCAGCTGAAACTCAAAGAAGCCACCTGGGTTCCCCATTTATTTCGTGTTAGTGTTTCTCAGAATGAATACAACAATGAGAAGAGACAAAGGATCACTGTCAGGTCAGTTGCTCCAGTTGACTTTGCTGCTGAATCTAGATTTCTGCTAGAAGAAATAGCAAAGATGAAAGCTTCATAA 1869 42.16 MANTPTPAGISNILANPSPDSSSDVPHVVLQVLDLKATGNRYMFTASDGDMKLKAILPSNLTSEVISGNIQNLGLVRVLDYSLNDIPNKPEKYLIVTKCEVVSPALEKEVRTEIKKEEASIVLKPKQEFDDKSAISAGAGILLKPKQELVAKSAAQIVHEQRTNMAPPARMSMTRRVHPLVYLNPYQGDWTIKVHVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNEAARKFYEKFALGKVYYISKGTLKVANKRFKTVQNDYEMTLNVNSQVDEVSNEAVFIPETKFNFVKIDMLGPHVNGKELVDVIGVVQSVSPTMSIRRKINNETAPKRDITIADETKKTVVISLWNDLATTLGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSILINPDIKEAHQLRSWYDSEGKAISMASVSSGLSPLSKSGSRSMYSDRVSLSHILQNKSLGEEKPMFFSIRAHVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCESCQKNDEECSLRYIMAVRVSDASGEGWISTFNDEAERIIGCSADELEQLKSQIGEDSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 30971864 30975823 + Sed0027547.1 Sed12g2011 732967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2011 622 CDD RPA1_DBD_A 179 282 - -
Sed12g2011 622 Gene3D - 432 619 IPR012340 -
Sed12g2011 622 Gene3D - 6 114 IPR012340 -
Sed12g2011 622 Pfam Replication protein A OB domain 307 404 IPR031657 -
Sed12g2011 622 SUPERFAMILY Nucleic acid-binding proteins 23 107 IPR012340 -
Sed12g2011 622 Pfam OB-fold nucleic acid binding domain 196 273 IPR004365 GO:0003676(InterPro)
Sed12g2011 622 NCBIfam replication factor-a protein 1 (rpa1) 13 618 IPR004591 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro)
Sed12g2011 622 Pfam Replication factor-A C terminal domain 467 612 IPR013955 -
Sed12g2011 622 SUPERFAMILY Nucleic acid-binding proteins 295 424 IPR012340 -
Sed12g2011 622 SUPERFAMILY Nucleic acid-binding proteins 446 619 IPR012340 -
Sed12g2011 622 Pfam Replication factor-A protein 1, N-terminal domain 6 103 IPR007199 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)
Sed12g2011 622 FunFam Replication protein A subunit 4 114 - -
Sed12g2011 622 PANTHER REPLICATION FACTOR A 1, RFA1 178 596 IPR004591 GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER)
Sed12g2011 622 FunFam Replication protein A subunit 176 285 - -
Sed12g2011 622 MobiDBLite consensus disorder prediction 1 23 - -
Sed12g2011 622 FunFam Replication protein A subunit 433 619 - -
Sed12g2011 622 Coils Coil 538 558 - -
Sed12g2011 622 CDD RPA1_DBD_C 455 618 IPR047192 -
Sed12g2011 622 Gene3D - 174 282 IPR012340 -
Sed12g2011 622 FunFam Replication protein A subunit 289 428 - -
Sed12g2011 622 SUPERFAMILY Nucleic acid-binding proteins 178 286 IPR012340 -
Sed12g2011 622 CDD RPA1_DBD_B 312 418 - -
Sed12g2011 622 Gene3D - 290 430 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0901 Sed-Chr4:8128451 Sed12g2011 Sed-Chr12:30971864 2.00E-77 dispersed
Sed12g2011 Sed-Chr12:30971864 Sed08g0277 Sed-Chr8:1617414 2.5e-313 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2011 K07466 - csv:101208545 1084.71