Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2017 ATGTATGGTCAGACAAATTATGCTTCTCAGTCCGGGCAGGGTCCTCAGAAACCATGGCCACCTGCATACCAGCAGCGTGCTGTAGCACCTCCTCCTCCGCCTCCGCCTCCTCCTAGTTCGTATATTCAACCGGGCCCTCCAATCCCTTCACATCCTACAACTCAACAAATACCAGCTCCTCCACATCAGGCTGGGCAACCCCTTCATTTGTCTCAGTCGGGGTCCCATGGCCCACCACCTCCCCGTTATCAGGGTCCATCGTTTCAAGGGCTACCTGGTGGGATCACAAATATCCATCAAACATTCTTTCACAGTTTTCCACCAGTGCATGGAAGTACTCAACTTTCTCAATTTAACTCAAATGCTCAGCAGAAAGTACAACTTTCACACTCTAGAGTTCAGAACATGCATCATGCTCTACCTCCGCCACCGCCACCGCCACCGCCACCGCCACAGCCGTTGCCGCAACCACCTCCTCCTCCTGCTCATGCTCCTAGTTCAGATGTATTACGTCCTCTACATCCTCCTTTTCAAGGACAAACGTTGTATGGAGCTCGAATTCATCCACCATTGCAGCTAGGTGGTCTGCAAGTATTTCCCTCTATACCACAACATCCCACAACATGCAATTTTCCTACTCCTCCCCCTTCTTTTGGAGGGCCCATGCCATCAAATCTTGGAGAACCTCATTTGCTTCCGATGGTTCCTCCACCTCCACCATCATCTCCGCCACCTATTCCACCTTCTCCCCCTCCTCCCCCCACCTCACCCTCTTTTTCAATTCCAAATCCAGACTCTTCCAACTCGTCGTGCCGGTCTGAATTTGATCCTAGTTCTACCATTCATCGTAGTAAAAAGTTGAAGAGCTCTGAAATTGATCGGGGAGGCGTACCTCCCTGTCATTCAGGGGATAGTGGACCCAAGCGTGACGACCATATAGATTTAGAAGGTGGGATTGACCTCAGGATGGATTCTAAAGTGGACAATGAGATTGCAAATGAATATTCTGTGCAGCTTACACCATCTCCACCAAAGCCAAAAGATGATAGAATTGTCAGGAAGATAGAAGTATTATGTCAGCTCATTGCTAATAATGGTTCCAGTTTTGAAGACACCGCTCGCCAGAAGCAATTTGGGAATCCAGAGTTTGAATTTTTATTTGGTGGTGAACCAGGAACTGAATCTGCAGTTGGCCATGAATATTTCTTATGGATGAAGAAGAAATCTATTTTGGCTCGCAAAAATAAAGCAATGGAAGAAAAATCTCCATCGAGATCTTTATGCATTGAACCACAATCTGAGCATTTGGCAATGTCAGCAGCAACCATTTCTCCTGCAAACTCGGACATGGAGATGGAAGATGATATCAGTCCAGCCGATATAGGAGAGGAAACTAGTCACTCATTTGAAATTCAAAGCTACGAGAGCAAATCAAGAAAGGAGGAGCACGATGTAAAGGGTCAGTTGCAATCACCTAAAGATTTGCAAAGATGCAGCCAAGAAAAGGAGAAAGCAGCTGAAGATGGAGGGCCAAAACTTCTGCTTGACCATGAAAACCCTGTCCGTGTTGCAGCCAGCCAAGTTCACAGCCCTGAAAGAAGCACGGCTGGAGTTTCTGAACTGCCTCTAGAAAACAAATTTGAGAGTTTTGCTACCTGTTCGCCGAATGGAAACAATATACGTTGTGAAGTAGCTGCTTCTGAAGCCATTAATTCTAGTCAGTCTACTGCACTTATTACTGATGACAGCTCATTTAGACTTATACAGGACTATTCTTCCGATGAAGATTCAGAAAGTGATAAGGAATTACATCCTAAAGATGTCCGCCCTGTTGATATTTCACCTTCACCTCTAGCTTCTTCCAAGACTTCCGGCAAAGACAATGATAATCTGACTATTCTTGGATCAAAAGCTTCTTGCCAGGTTCAACGGAATTCTGGTCCACCTTGTGAATCCTCCGTGCCTGAATCTGGTGCTCTGTCCCTCTCAGAATTCCCTGAACTGATTTTTGATGTCAATGTCGCAAATGTCGGAGAGACAGGGAATGAACAGAGTTATAACAACCAACAGAATCAAATTGGTACTAGCATCAGTTCTAAGTCTTTGGATGCAATGAATGGTCGTAGTGTTGATGTTCTTCAAGAAACTGACATCTTACATAAAGAAAATGATGAGGAAAAGGTGAAGTTGAGATCATCTCCTGTAAAAATAGATGAATTTGGAAGACTAGTCAAAGAAGGTGGTAGTGATAGCGATTCAGATGATTTACACTACACAGGGAGACATAAGCATAGAAGAACCAGAAATAGTAGTCAAAGTCGCTCTCCTATTGATAGAAGGAGGGGGCAAAGGAGTCCATTGAGAAGAAAGGAGAGGAGGCGAAGCCGCTCTCGCAGTTGGTCTCCTCGTAACCAAAGAGGCAGAAGCAGGTCTCCTGCCAGCAGGCGTACAAGTCAACGTAATAGTGAGAATATGAGACGGGATAAGGGTATGATAGGAAAATGCTTTGACTTTCAGCGAGGTAGGTGCTATAGAGGAGCATCTTGTCGCTATGTGCACCATGAACCCAGCAAGAATGATGGATCAAGACTCCATAGGAGCAAACATCACGACATACACCCAACTTCAAAGAATATAAAGAGTAGAGAAGACACTATGAACATGTCTACGGAAGTATCAAATCTTGGGCATATTAAAGTCGAGAATCGGGATTGCTTCCAGCATTATGTGTCCGTGAAGGGCGATACTCCTGATTGGAAGACAGAGCATCCTACTGATGATCCAAATTCAGATGTAAATAAATGGCAGAGTTCTATAGGTGGTTTGGGCTTAGTTCAAGAAGAATTAATGTATTCAAAATGGACAGGGACTGTTCTCACTCATGTTAACGATAGTGGTCAAGAAGCAGAGAAGTCTAATGAACAACATTCAGTTACAGTCTCCTTACAATGCATGAGCAATGCTGTTACTGAGAAATTCTCTAGAAATATTTCCACAAGCATACCAACTTCTGCAGAGAATTCTGTGGCTCAACAATCCAATATAGTTGTTGCAGAGCTTCAAACTGCCAATAGCCTCTCACACCAGATGGATGGTTCGTTTTTGTCCAATTTATCACCTGATCAAGTAACTGCGGTTACCATCAATGAAGACCCTGAATGTGAACATTCTCTGGAAGAAACTTCATCCATTAATCCACAGTTTAATGACAGTTTTGCTAGTCAGCCACATACGACATCACAATTTTTATCACAGTCTCTAGTACCGAATCCATTATCTGCTGCTGCTCCGGGTTGTGCTACTGATGACACCCATCCTCTTAAAGAGCTGCCTCCTCCGCCTCCTCTCACTTCATCCATCAATCCACAGATTGATGATAGTTCTGCTAGTCAGCCACCTATGACCTCACAATATTTATCGCAGTCTCCTCATAGAGTGCTGCCTCCTCCGCCTCCTCTCACTTCATCCATTAATCCACAGTTTGATGACAGTTCTGCTAGGCAGGCACCTATGAACTCACAATTTTTATCACAGTCTCCAGTACTGAAACCATTATCTGCCACTGCTCCAGGGGTTGCTACTGACAATACCCGTCTTCTTAGAGAGATGCCTCCTCATCCTCTCATAATGTCATGTGTCACTAGTGCTGAGGTTTCATTGCCTGGCCCCCATAATTTTGTGCCACAAAATGCTTCATTTCCTTCTAATTCTTCACTACCAGGAGGTTTTCGTCCCCATCAAGATTTTGTATCTGTCCAACCCTCTCATTACCACAGTACCTCTTTACTGCCTCCAAAACCGTCGTATGATTTAACATCGACTCCCGCAACTCTCAAAGATAGTATGCCAATGCAATTTCATCAGAGTCATTTGTCTCAAGGAAGTGATCTGGGTTCTCAGTCTGTTATGAAATCCCAGCCATTGCAGTTGCATTCTCATTCTAAGCTTGGTGAGTCCCCAGTTCAGGAGCTTTATAGAGCTTCAATGCATATGGATGAAATTAGATCAACTGTCCCAGTTGCAAATAACCAACCTTTTGGATTCCCGAGCTTTCAGAATGAAGAAAATTTTGGGCGGAGTTCTGTGGAAATGAATTCTTCCAGTTTTTTCCCTCATCGAAACTTCAATGACCAATCTATGCCCTTTACAAATTCAAATATAATGCCAACTTCCGGTGGCAATTTTCCTCCTAGTGCATTTCAAAGTTCATTTTCTCAGTTTCATCCTTATTCACGGTTTCAACCACCACTGTATTCCTCACAACCAACTCATGATGGTTTGTTACGCGACTCAAGTCAGATAGGTAATATGTCTCGCGACTCAAGTCAGGTAGGTAATATGTCTCGACATTATCATGATCCTCGAAGCATGGACCATTCGTCTTTGCTTCCGGATTTTGGGGGTTTGGGAGCTACCACTTATCATAATCCTTACGCATCTACTTTTGAGAAGCCACTTAGCTCCAGTTTCAGATCTAACACTTCGAACTTTGGAAATGATGTAACTAGTGGTGATATACATGATTCTGCTTTCAATGTGAACAATGTCAGAGTTGATGGGCAAGGTGCTAATTATGTTGGATCAAGGCTGACAACTGCTTCACCAAGCTCCACAAAACCTTTGGATAAAGTCTTGCCCAGCTCAGGTGGTGATCAGTATGATCCACTATTCGACAGCATCGAGCAATCATCACCTAAAATCAAGAAATCTGATCGTGGTAAAAAGCTGGAAAAGACAAGAGAATCTCATGTGATGACAAGACTTAGTGGTTCCCATAAATTACTAGATGTGGAGGAGAACAACAGGCATAAGGAAGTTGCTGTTGCTTCGACTACCTCTCTAGATAATGATGAATTTGGGGAGACAGCAGATGCAGAAGGTGGTGATGTTGAGAATGATTTTGACGACGAAGCAGACTTAACAGGAGAGATTGAAATTGACCAGGTTAAGTCCTCAGAAAAGATCAAGAAATCCAAAGGTTCTAGGTCACTAAGGCTTTTCAGGATTGCCATTGCGGACTTTGTTAAGGAAATTCTGAAACCATCATGGCGACAGGGCAATATGAGCAAGGAAGCTTTTAAGACAATTGTAAAGAAAACTGTTGACAAGGTATCTGGAGCTATGAAGAGTCACCAAGTACCCAAGTCTCAAGCAAAGATAAATCGGTACATGGATTCGTCACAACGAAAACTGACAAAGCTTGTCATGGGTTACGTTGACAAGTACGTGAAGACATAG 5238 43.72 MYGQTNYASQSGQGPQKPWPPAYQQRAVAPPPPPPPPPSSYIQPGPPIPSHPTTQQIPAPPHQAGQPLHLSQSGSHGPPPPRYQGPSFQGLPGGITNIHQTFFHSFPPVHGSTQLSQFNSNAQQKVQLSHSRVQNMHHALPPPPPPPPPPPQPLPQPPPPPAHAPSSDVLRPLHPPFQGQTLYGARIHPPLQLGGLQVFPSIPQHPTTCNFPTPPPSFGGPMPSNLGEPHLLPMVPPPPPSSPPPIPPSPPPPPTSPSFSIPNPDSSNSSCRSEFDPSSTIHRSKKLKSSEIDRGGVPPCHSGDSGPKRDDHIDLEGGIDLRMDSKVDNEIANEYSVQLTPSPPKPKDDRIVRKIEVLCQLIANNGSSFEDTARQKQFGNPEFEFLFGGEPGTESAVGHEYFLWMKKKSILARKNKAMEEKSPSRSLCIEPQSEHLAMSAATISPANSDMEMEDDISPADIGEETSHSFEIQSYESKSRKEEHDVKGQLQSPKDLQRCSQEKEKAAEDGGPKLLLDHENPVRVAASQVHSPERSTAGVSELPLENKFESFATCSPNGNNIRCEVAASEAINSSQSTALITDDSSFRLIQDYSSDEDSESDKELHPKDVRPVDISPSPLASSKTSGKDNDNLTILGSKASCQVQRNSGPPCESSVPESGALSLSEFPELIFDVNVANVGETGNEQSYNNQQNQIGTSISSKSLDAMNGRSVDVLQETDILHKENDEEKVKLRSSPVKIDEFGRLVKEGGSDSDSDDLHYTGRHKHRRTRNSSQSRSPIDRRRGQRSPLRRKERRRSRSRSWSPRNQRGRSRSPASRRTSQRNSENMRRDKGMIGKCFDFQRGRCYRGASCRYVHHEPSKNDGSRLHRSKHHDIHPTSKNIKSREDTMNMSTEVSNLGHIKVENRDCFQHYVSVKGDTPDWKTEHPTDDPNSDVNKWQSSIGGLGLVQEELMYSKWTGTVLTHVNDSGQEAEKSNEQHSVTVSLQCMSNAVTEKFSRNISTSIPTSAENSVAQQSNIVVAELQTANSLSHQMDGSFLSNLSPDQVTAVTINEDPECEHSLEETSSINPQFNDSFASQPHTTSQFLSQSLVPNPLSAAAPGCATDDTHPLKELPPPPPLTSSINPQIDDSSASQPPMTSQYLSQSPHRVLPPPPPLTSSINPQFDDSSARQAPMNSQFLSQSPVLKPLSATAPGVATDNTRLLREMPPHPLIMSCVTSAEVSLPGPHNFVPQNASFPSNSSLPGGFRPHQDFVSVQPSHYHSTSLLPPKPSYDLTSTPATLKDSMPMQFHQSHLSQGSDLGSQSVMKSQPLQLHSHSKLGESPVQELYRASMHMDEIRSTVPVANNQPFGFPSFQNEENFGRSSVEMNSSSFFPHRNFNDQSMPFTNSNIMPTSGGNFPPSAFQSSFSQFHPYSRFQPPLYSSQPTHDGLLRDSSQIGNMSRDSSQVGNMSRHYHDPRSMDHSSLLPDFGGLGATTYHNPYASTFEKPLSSSFRSNTSNFGNDVTSGDIHDSAFNVNNVRVDGQGANYVGSRLTTASPSSTKPLDKVLPSSGGDQYDPLFDSIEQSSPKIKKSDRGKKLEKTRESHVMTRLSGSHKLLDVEENNRHKEVAVASTTSLDNDEFGETADAEGGDVENDFDDEADLTGEIEIDQVKSSEKIKKSKGSRSLRLFRIAIADFVKEILKPSWRQGNMSKEAFKTIVKKTVDKVSGAMKSHQVPKSQAKINRYMDSSQRKLTKLVMGYVDKYVKT 1745
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31034998 31047878 - Sed0005310.1 Sed12g2017 732973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1564 1581 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1529 1581 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 856 877 - -
Sed12g2017 1745 ProSiteProfiles SURP motif repeat profile. 354 402 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2017 1745 ProSiteProfiles Zinc finger C3H1-type profile. 834 856 IPR000571 GO:0046872(InterPro)
Sed12g2017 1745 MobiDBLite consensus disorder prediction 207 222 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 804 819 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 113 134 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 592 609 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 741 828 - -
Sed12g2017 1745 SUPERFAMILY Surp module (SWAP domain) 336 405 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2017 1745 MobiDBLite consensus disorder prediction 304 321 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 741 760 - -
Sed12g2017 1745 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1299 1744 IPR052650 -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1093 1167 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1529 1543 - -
Sed12g2017 1745 Pfam Surp module 355 389 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2017 1745 MobiDBLite consensus disorder prediction 138 166 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1120 1143 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1054 1081 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 230 260 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 785 803 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 261 277 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 24 56 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 198 321 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 473 515 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 616 632 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 681 700 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 57 73 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 278 292 - -
Sed12g2017 1745 Gene3D Surp module 338 412 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1 96 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 113 185 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1059 1081 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 1 18 - -
Sed12g2017 1745 MobiDBLite consensus disorder prediction 592 632 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2017 Sed-Chr12:31034998 Sed14g0219 Sed-Chr14:2430994 1.00E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g457 Blo04g00798 . . . . . . . . . . Cma11g00215 Car10g00275 Car11g00194 Sed12g2017 . Cpe04g01453 Bhi02g00087 Tan09g2029 Cmetu02g1493 . Hepe09g0282 . . . . . . . . . Cone2ag0794 Cone16ag0215 . . . . . . . . . Bda14g00888 . Bpe15g00571 . . . Cmo10g00311 Cmo11g00217 . . . . . . . . . . . . . . . . . . . . . Csa01g00305 Chy02g02433 Cme02g01821
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009616 1 1 0 0 1 1 2 1 1 1 1 1 2 2 1 2 1 0 2 1 1 1 1 1 1 1 1 1 2 1 33