Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2018 ATGCCGCCATTAACGAATGTTCATCTTCGAAGATTCCTTATTCGATCTCTATCATCTTATTCTTCTTCTTCTTCACCTTCAAGATCTCTGAATGAAGCTACCAGAACTGTCGTTCTACATCGAAATCCGACCTCTGTTTTCCACCATTTCCGTCATCAAGGACCGGCGTTGAGGTTTTCAAATCCATTACAGCTTTCACTTTCTCATTCTTTCTTCTCCGATTCCGGCGAGAATGACGTGGATCAAACATCGCAGTCACTTGCGGCGGAGCTTCTCCGAGATCCGGATTTGGATCCTCTCCCCATTACGGAGCGTCTTCAACTCAGCTTTTCGCATATCAAACCGAATCCGGAGTTGGTGCTCAACACGCTCAATCTCGCATCGGAAGCTGGCCGGACGGTTTTAGGGTTTAACGACTGGTTAGTATCGAATCCTGACTTTAATCATACGGACGAGACTATATCGTATTTTGTCGATTATTTTGGTCGTAGAAAGGATTTCAATTCGATTCATGAAGTTCTTGCTAAGGGTTTAGGGGTTAGTGGGGATAAGACCCTGCAGTCGACTATTGATCGGTTCGCTCGTGCTGGGCGACACACGAAGCTGATATCGTTTTTTGAGACGATGGAGAAGAATTATGGGTTCAAGAGGGATAAGGAATCGCTCAGGATGGTGGTGGAGAAGCTTTGTGAGAATGGCTTTGCTAGCCATGCTGAGAAGGTGGTTAAAGACTTGGCGAATGAGTTTTTCCCTGATGAAGCTATTTGTGATACTCTGATCAAAGGATGGTGCGTTGATGAGAAGCTCGATGAGGCAAAGAGGCTGGCGGGTGAGATGTATAGGGGAGGGTTCGAGCTCGGGACACCGGCCTACAATGCTCTGCTTGACTGTGTTTGCAAGCTCTGTAGAAAGAAGGATCCGTTTAGGCTTCAATCTGAAGCTGAGGTAGTTTTAGTGGAAATGGATTATCGTGGGGTTCCACGGAATGGGGAAACTTTCAATGTGCTGATTAATAATCTGTGCAAGATTAGGAAAACTTCTGAAGCACTAAATTTATTTCATCGAATGGGGGAATGGGGTTGTCTTCCTGATGCTGAAACGTTTGTTATTTTGATTAAAAGTTTGTATCAAGCGGCGAGGACCGGAGAGGGGGATGAAATGATTGACAGGATGAGATCTTCGGGATATGGCGATGCACTTGATAAGAAGGCTTATTACGATTTTCTGAAGATTTTGTGTGGAATCGAGAGGATTGATCATGCTCTGATTGTTTTCGAAAAGATGAAGAATGACGGATGTGAACCTGGAATTAAGACATACGATCTATTGATGGGAAAATTCTGTGCACATAATCGTCTCGACAAAGCGAATTCACTCTATAATGAAGCTCAAAAACGGGGAGTGCCGGTTGTTTCGAAAGTATACAAGGTGGACCCAAGATATGTAGCGAAGCCAAAGGTAAAGAAGGCTGAGAAGAAGAGGGAGACATTGCCAGAGAAAATGGCGAGGAAGAGGAGACGATTGAAGCAAATTCGATTGAGTTTTGTCAAGAAGCCGAAAAAATCAATGCGTCGAGCATATTGA 1584 44.38 MPPLTNVHLRRFLIRSLSSYSSSSSPSRSLNEATRTVVLHRNPTSVFHHFRHQGPALRFSNPLQLSLSHSFFSDSGENDVDQTSQSLAAELLRDPDLDPLPITERLQLSFSHIKPNPELVLNTLNLASEAGRTVLGFNDWLVSNPDFNHTDETISYFVDYFGRRKDFNSIHEVLAKGLGVSGDKTLQSTIDRFARAGRHTKLISFFETMEKNYGFKRDKESLRMVVEKLCENGFASHAEKVVKDLANEFFPDEAICDTLIKGWCVDEKLDEAKRLAGEMYRGGFELGTPAYNALLDCVCKLCRKKDPFRLQSEAEVVLVEMDYRGVPRNGETFNVLINNLCKIRKTSEALNLFHRMGEWGCLPDAETFVILIKSLYQAARTGEGDEMIDRMRSSGYGDALDKKAYYDFLKILCGIERIDHALIVFEKMKNDGCEPGIKTYDLLMGKFCAHNRLDKANSLYNEAQKRGVPVVSKVYKVDPRYVAKPKVKKAEKKRETLPEKMARKRRRLKQIRLSFVKKPKKSMRRAY 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31048727 31051317 + Sed0019900.1 Sed12g2018 732974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2018 527 Pfam PPR repeat family 332 375 IPR002885 -
Sed12g2018 527 Gene3D Tetratricopeptide repeat domain 396 523 IPR011990 GO:0005515(InterPro)
Sed12g2018 527 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 137 477 IPR050667 -
Sed12g2018 527 Gene3D Tetratricopeptide repeat domain 306 395 IPR011990 GO:0005515(InterPro)
Sed12g2018 527 Pfam Pentatricopeptide repeat domain 419 447 IPR002885 -
Sed12g2018 527 FunFam Pentatricopeptide repeat-containing protein PNM1, mitochondrial 163 305 - -
Sed12g2018 527 Gene3D Tetratricopeptide repeat domain 150 305 IPR011990 GO:0005515(InterPro)
Sed12g2018 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Sed12g2018 527 FunFam pentatricopeptide repeat-containing protein PNM1, mitochondrial 306 394 - -
Sed12g2018 527 NCBIfam pentatricopeptide repeat 439 469 IPR002885 -
Sed12g2018 527 NCBIfam pentatricopeptide repeat 332 365 IPR002885 -
Sed12g2018 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Sed12g2018 527 Pfam PPR repeat 258 283 IPR002885 -
Sed12g2018 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Sed12g2018 527 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2018 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g448 . Blo16g00207 . Bda15g00630 Bpe12g00519 . . . Cmo13g00936 . Cma10g00290 Cma11g00217 Car10g00272 Car11g00196 Sed12g2018 Cpe20g00222 Cpe04g01451 Bhi02g00082 Tan09g2024 Cmetu02g1024 . Hepe09g0284 . . Cla06g01532 Cam06g1689 Cec06g1751 Cco06g1749 Clacu06g1656 Cmu06g1603 Cre06g2415 . Cone16ag0131 Cone13ag0030 Cone19ag0038 Lsi02g00346 . . Cme12g01723 . . . . . . . Bma08g00249 Sed08g2544 Cmo10g00309 Cmo11g00219 Cma13g00908 . Car13g00748 . . . Bhi08g01447 Tan05g2046 Cmetu12g1297 Lac10g0416 Hepe07g2255 . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01403 Csa01g00342 Chy02g02400 Cme02g01814
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009519 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33