Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2019 ATGAGGTTTCGCCGCTTCGCTTCCACCGGATCCGTCGCCGGAATCTCCGACATTGCCGCCGTGCTTCTCTTTCTACTTTCCTGCTTCAGTTTCACTTCAACAGAAGCCTATAATGCACTTGACCCCAAAGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACACCGGATGGATATGTTGCTGTTGTTACAATGTACAACTTCCAGAAATACCGCCAAATTCAAGCTCCAGGTTGGACATTGGGTTGGACATGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACAGAGCAGGGAGACCGTTCAAGATTCAAAGAATATGTTCCTCATAGCTGCAAAAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGTTGAGCTCTTGGGCTCGAGACCCGGCCAATGCAGTAAGTTCATTTCAACTCGGTGTTGGCGCTGCAGGAACAACTAAGAAGACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCTGGACCTGGAAGATACACTTGTGGTCCAGCAAAAATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAATAACTCAAGCTTTAATGACTTGGAAAGTTACATGCTTCTATTCACAATAA 678 44.4 MRFRRFASTGSVAGISDIAAVLLFLLSCFSFTSTEAYNALDPKGNITIKWDVMSWTPDGYVAVVTMYNFQKYRQIQAPGWTLGWTWAKKEVIWSMMGAQTTEQGDRSRFKEYVPHSCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWARDPANAVSSFQLGVGAAGTTKKTVKLPKNFTLKAPGPGRYTCGPAKIVKSTKFISGDKRRITQALMTWKVTCFYSQ 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31054307 31059046 + Sed0026561.1 Sed12g2019 732975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2019 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Sed12g2019 225 PANTHER PROTEIN COBRA 23 225 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed12g2019 225 Pfam COBRA-like protein 60 224 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2019 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2019 Sed-Chr12:31054307 Sed12g2020 Sed-Chr12:31062518 8.90E-118 tandem
Sed12g2019 Sed-Chr12:31054307 Sed06g0869 Sed-Chr6:10099655 1.20E-95 wgd
Sed12g2019 Sed-Chr12:31054307 Sed08g0288 Sed-Chr8:1707122 2.00E-109 wgd
Sed12g2019 Sed-Chr12:31054307 Sed08g2132 Sed-Chr8:35298370 1.40E-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed08g0288 . 40 439 COBRA Gene Family AT5G60920 78.8 2.4e-206 715.7
Sed12g2020 . 48 448 COBRA Gene Family AT5G60920 78.4 5.4e-206 714.5
Sed06g0869 . 36 434 COBRA Gene Family AT5G60920 74.7 7.9e-197 684.1
Sed08g0289 . 55 454 COBRA Gene Family AT5G60920 67.4 9.0e-177 617.5
Sed06g0870 . 31 427 COBRA Gene Family AT5G60920 67.9 4.5e-176 615.1
Sed04g1592 . 56 454 COBRA Gene Family AT5G60920 52.8 7.8e-128 454.9
Sed08g2132 . 38 247 COBRA Gene Family AT5G60920 67.1 9.6e-86 315.1
Sed12g2019 . 48 225 COBRA Gene Family AT5G60920 78.1 1.4e-84 311.2
Sed12g2020 . 22 452 COBRA Gene Family AT3G02210 73.3 4.0e-202 701.8
Sed08g0288 . 14 444 COBRA Gene Family AT3G02210 72.5 1.5e-201 699.9
Sed06g0869 . 19 440 COBRA Gene Family AT3G02210 74.7 4.4e-201 698.4
Sed08g0289 . 27 453 COBRA Gene Family AT3G02210 66.5 5.7e-180 628.2
Sed06g0870 . 5 429 COBRA Gene Family AT3G02210 67.3 2.8e-179 625.9
Sed04g1592 . 26 458 COBRA Gene Family AT3G02210 54.0 6.3e-139 491.9
Sed08g2132 . 16 247 COBRA Gene Family AT3G02210 65.4 4.2e-90 329.7
Sed12g2019 . 22 225 COBRA Gene Family AT3G02210 73.5 3.5e-89 326.6
Sed12g2020 . 22 452 COBRA Gene Family AT3G29810 73.9 3.7e-200 695.3
Sed08g0288 . 14 430 COBRA Gene Family AT3G29810 74.9 2.0e-198 689.5
Sed06g0869 . 20 440 COBRA Gene Family AT3G29810 71.5 5.7e-193 671.4
Sed06g0870 . 14 428 COBRA Gene Family AT3G29810 67.5 7.5e-177 617.8
Sed08g0289 . 38 436 COBRA Gene Family AT3G29810 67.2 3.1e-175 612.5
Sed04g1592 . 27 455 COBRA Gene Family AT3G29810 52.8 1.6e-134 477.2
Sed08g2132 . 24 247 COBRA Gene Family AT3G29810 63.4 4.5e-89 326.2
Sed12g2019 . 22 225 COBRA Gene Family AT3G29810 71.4 3.8e-88 323.2
Sed08g0289 . 43 363 COBRA Gene Family AT5G15630 85.7 1.5e-177 619.8
Sed06g0870 . 1 339 COBRA Gene Family AT5G15630 82.1 4.1e-175 611.7
Sed12g2020 . 31 361 COBRA Gene Family AT5G15630 73.2 4.6e-150 528.5
Sed08g0288 . 23 353 COBRA Gene Family AT5G15630 72.6 6.0e-150 528.1
Sed06g0869 . 24 350 COBRA Gene Family AT5G15630 68.5 1.3e-144 510.4
Sed08g2132 . 15 247 COBRA Gene Family AT5G15630 66.5 1.4e-93 340.9
Sed12g2019 . 31 225 COBRA Gene Family AT5G15630 76.4 1.0e-85 314.7
Sed06g0869 . 32 212 COBRA Gene Family AT5G60950 60.8 1.5e-63 240.4
Sed08g0288 . 22 216 COBRA Gene Family AT5G60950 58.2 9.7e-63 237.7
Sed12g2020 . 30 224 COBRA Gene Family AT5G60950 57.1 3.7e-62 235.7
Sed12g2019 . 21 225 COBRA Gene Family AT5G60950 55.1 6.5e-59 224.9
Sed06g0870 . 27 207 COBRA Gene Family AT5G60950 55.2 2.3e-56 216.5
Sed08g0289 . 51 231 COBRA Gene Family AT5G60950 55.8 1.5e-55 213.8
Sed04g1592 . 27 438 COBRA Gene Family AT1G09790 58.9 7.1e-151 531.6
Sed06g0869 . 14 420 COBRA Gene Family AT1G09790 52.4 2.5e-132 469.9
Sed08g0289 . 30 434 COBRA Gene Family AT1G09790 52.9 2.5e-132 469.9
Sed12g2020 . 28 432 COBRA Gene Family AT1G09790 52.6 6.2e-131 465.3
Sed08g0288 . 20 424 COBRA Gene Family AT1G09790 51.7 5.3e-130 462.2
Sed06g0870 . 15 411 COBRA Gene Family AT1G09790 52.8 9.9e-129 458.0
Sed12g0793 . 31 641 COBRA Gene Family AT4G16120 65.3 2.4e-251 865.9
Sed02g1150 . 36 630 COBRA Gene Family AT4G16120 66.8 4.0e-251 865.1
Sed07g1929 . 64 663 COBRA Gene Family AT4G16120 53.4 4.5e-202 702.2
Sed02g1150 . 8 651 COBRA Gene Family AT3G16860 60.4 3.3e-237 818.9
Sed12g0793 . 5 633 COBRA Gene Family AT3G16860 60.7 1.5e-234 810.1
Sed07g1929 . 59 658 COBRA Gene Family AT3G16860 51.8 3.8e-193 672.5
Sed12g0793 . 9 648 COBRA Gene Family AT5G49270 59.3 6.2e-236 814.7
Sed02g1150 . 10 632 COBRA Gene Family AT5G49270 60.6 5.3e-235 811.6
Sed07g1929 . 68 662 COBRA Gene Family AT5G49270 51.9 8.0e-199 691.4
Sed07g1929 . 6 682 COBRA Gene Family AT3G20580 59.7 3.0e-246 849.0
Sed12g0793 . 25 645 COBRA Gene Family AT3G20580 54.4 1.2e-205 714.1
Sed02g1150 . 29 629 COBRA Gene Family AT3G20580 54.4 1.6e-202 703.7
Sed07g1929 . 62 683 COBRA Gene Family AT4G27110 61.6 5.7e-237 818.1
Sed02g1150 . 26 647 COBRA Gene Family AT4G27110 52.2 5.6e-200 695.3
Sed12g0793 . 20 645 COBRA Gene Family AT4G27110 51.6 3.7e-196 682.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016210 2 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 1 0 1 1 0 0 1 0 0 8