Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2019 ATGAGGTTTCGCCGCTTCGCTTCCACCGGATCCGTCGCCGGAATCTCCGACATTGCCGCCGTGCTTCTCTTTCTACTTTCCTGCTTCAGTTTCACTTCAACAGAAGCCTATAATGCACTTGACCCCAAAGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACACCGGATGGATATGTTGCTGTTGTTACAATGTACAACTTCCAGAAATACCGCCAAATTCAAGCTCCAGGTTGGACATTGGGTTGGACATGGGCAAAGAAAGAAGTGATTTGGAGCATGATGGGAGCCCAAACAACAGAGCAGGGAGACCGTTCAAGATTCAAAGAATATGTTCCTCATAGCTGCAAAAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGTTGAGCTCTTGGGCTCGAGACCCGGCCAATGCAGTAAGTTCATTTCAACTCGGTGTTGGCGCTGCAGGAACAACTAAGAAGACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCTGGACCTGGAAGATACACTTGTGGTCCAGCAAAAATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAATAACTCAAGCTTTAATGACTTGGAAAGTTACATGCTTCTATTCACAATAA 678 44.4 MRFRRFASTGSVAGISDIAAVLLFLLSCFSFTSTEAYNALDPKGNITIKWDVMSWTPDGYVAVVTMYNFQKYRQIQAPGWTLGWTWAKKEVIWSMMGAQTTEQGDRSRFKEYVPHSCKKDPTVVDLLPGTPYNQQIANCCKGGVLSSWARDPANAVSSFQLGVGAAGTTKKTVKLPKNFTLKAPGPGRYTCGPAKIVKSTKFISGDKRRITQALMTWKVTCFYSQ 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31054307 31059046 + Sed0026561.1 Sed12g2019 732975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2019 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Sed12g2019 225 PANTHER PROTEIN COBRA 23 225 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed12g2019 225 Pfam COBRA-like protein 60 224 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2019 Sed-Chr12:31054307 Sed12g2020 Sed-Chr12:31062518 8.90E-118 tandem
Sed12g2019 Sed-Chr12:31054307 Sed06g0869 Sed-Chr6:10099655 1.20E-95 wgd
Sed12g2019 Sed-Chr12:31054307 Sed08g0288 Sed-Chr8:1707122 2.00E-109 wgd
Sed12g2019 Sed-Chr12:31054307 Sed08g2132 Sed-Chr8:35298370 1.40E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2019 - - - 0.0