Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2020 ATGAGGTCTCGCCGCTTCGCTTCCACCGGTTCCGTCGCCGGAATCTCCTACATCGCCGCCGTGCTTCTCTTTCTACTTTCCTGCTTCAGTTTCACTTCAACAGAAGCCTATGATGCACTTGATCCCAACGGGAACATCACAATCAAATGGGATGTAATGAGCTGGACACCGGATGGATATGTCGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTGGGTTGGACATGGGCAAAGAAAGAAGTAATTTGGAGCATGATGGGAGGTCAAACAACAGAGCAGGGAGACTGTTCAAGATTCAAAGGCAATCCTCCACATTGCTGCAAAAAAGATCCAACCGTTGTGGATTTATTGCCAGGAACTCCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATGAACTCTTGGGCCCAAGACCCAGCCAATGCAGCAAGTTCATTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAGACTGTCAAACTCCCCAAAAACTTCACTCTTAAAGCACCGGGACCTGGATACACTTGTGGTCCAGCAAAAATTGTGAAGTCAACCAAATTTATATCTGGAGATAAAAGAAGAATAACTCAAGCTTTAATGACTTGGAATGTTACATGCACTTATTCACAATTCCTTGCTCAGAAGACACCCACTTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACCATCGTCAACTGCCCAACTTGTACTTGTGGATGTCAAAACAACACTGCGGGTGCCAAGAGCTGTGTGGATTCAGATTCTCCTCACATATCTTCAGTATTATCAAATCCTGATAAATCAGGCATCGTTGAACCCCTGGTTCAATGCACTAGCCACATGTGTCCCATTCGAGTCCATTGGCATGTGAAGCTGAATTACAAGGACTACTGGAGGGTGAAGATCACAATCACCAATTTCAATTACAGAATGAACTACTCACTCTGGAATCTCGTCGTGCAGCATCCCAATTTCGATAATATCACCAAATTATTCAGCTTTAAATACAAGTCGCTGAGCCCATATGGTGACCTAAATGATACTGCCATGTTATGGGGAGTCAAGTTCTACAATGATTTTCTCAACCAAGCTGGCCCTCTTGGTAATGTGCAGTCCGAGCTTCTATTCCAGAAAGACCAAAATACTTTCACTTTCGACAAGGGTTGGGCGTTTCCGCGAAGAGTTTATTTCAATGGCGATAACTGCGTAATGCCACCTCCAGATGCCTATCCCTATTTGCCAAATGCCAGTTCCAAACTAGCTTTATCTCTACTTGCAACAATCTTAATATCGTCATTGGCATTACTGTTGAATTTTGGACTATAA 1371 43.76 MRSRRFASTGSVAGISYIAAVLLFLLSCFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNPPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVMNSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVKSTKFISGDKRRITQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGAKSCVDSDSPHISSVLSNPDKSGIVEPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYSLWNLVVQHPNFDNITKLFSFKYKSLSPYGDLNDTAMLWGVKFYNDFLNQAGPLGNVQSELLFQKDQNTFTFDKGWAFPRRVYFNGDNCVMPPPDAYPYLPNASSKLALSLLATILISSLALLLNFGL 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31062518 31067087 + Sed0011397.1 Sed12g2020 732976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2020 456 PANTHER PROTEIN COBRA 23 444 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Sed12g2020 456 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Sed12g2020 456 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Sed12g2020 456 PIRSF COBRA 9 455 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1592 Sed-Chr4:30689915 Sed12g2020 Sed-Chr12:31062518 1.60E-137 dispersed
Sed06g0869 Sed-Chr6:10099655 Sed12g2020 Sed-Chr12:31062518 8.50E-213 dispersed
Sed07g1929 Sed-Chr7:33709873 Sed12g2020 Sed-Chr12:31062518 7.60E-27 dispersed
Sed08g0288 Sed-Chr8:1707122 Sed12g2020 Sed-Chr12:31062518 2.50E-252 dispersed
Sed08g0289 Sed-Chr8:1710521 Sed12g2020 Sed-Chr12:31062518 1.00E-184 dispersed
Sed08g2132 Sed-Chr8:35298370 Sed12g2020 Sed-Chr12:31062518 6.00E-90 dispersed
Sed12g0793 Sed-Chr12:4865995 Sed12g2020 Sed-Chr12:31062518 3.90E-33 dispersed
Sed12g2019 Sed-Chr12:31054307 Sed12g2020 Sed-Chr12:31062518 8.90E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2020 - - - 0.0