Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2036 ATGACATTAGAGTGGAGAAAAAAAAATTGGTTGGAATCTGCAAGAGAAAAAATGGCGAAGCTGCTTCTCTATCTTCAAGCTCCCCATCTGGTTTCTTCCATCCATGGCGGAACCCTATCATTCTTCCTCCCCAAACCGTTTCCATTCCTCTCTTCTTCCTCCACCGCACAATGCCGCTTCGCCGCCGCCCTCTCCTTTTCTCTGGCTCCTCGCCGCCGCCGCCTCTCTGCTCGAGCGTTCGACGACTCTGCATCGGAGGCGAAGAGCGTGGCAAATGAAGAAGAAGACGCCGCAAACGAGGCTCCGATGAGCGGCGAGAGCTTCAGATCTCGCGACGAGGAGTATCCGAGTGGAGAATTCGAGTTCGAGCATTTCGGTGCGTGGAGGAGCTTTTTGGTGAAGCTTAAGATGCTGATTGCCGTTCCGTGGGAGCGCGTTCGTAAGGGCAGTGTCTTGCATATGAAATTGCGAGGACAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAGATCTGCGAGAACTTTGTCAAAGCCGCATACGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCACTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATACTGAATTTCAAGAAATCAGGTAAATTTGTTGTTGCCTATATTCCTACATGTCAAGAGAAAGAATACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCTCCAAGTGCTTATGTTTCTTTGTTTGGTTTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAGTAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTAGCACGGAGAAATATGTCAGAAGAAAATTGTGAAATGTTGACGACTTTGCTTGATAACATCTATGACAACTGGCTGGATAAAATTTCTTCAATAAAAGGAAAGAAAAGAGACGATATTGAAAGCTTTATTAATGAAGGAGTATACCAAATTGAAAGACTAAAAGAAGATGGTTGGATCACCAACATCCAGTATGAGGACGAGGTTCTCTCTATGTTAGGTGAAAGACTTGGACTGCCGAAGGATAAAAAAGTTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTAATTAGAGCTGGAGGAAGCATCACTCGTGTAAGAAGTCCTTTAAGTGCTTCTAGTTCTGGTATTACTGGGGAGCAATTCATTGAGAAGATTCGAAGTGTTAGAGAGTCGAAAAGATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCCGATTTGATGTGGAGAGAAATCAGACTTCTGGCTGCATCAAAACCTGTTGTTGCATCAATGGCTGATGTGGCAGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGAACAATTGTTGCAGAAAATCTAACCTTAACTGGATCTATTGGAGTTGTCACAGGAAAGTTTAACTTGGGGAAGCTATATGAAAAGATTGGCTTTAACAAGGAGGTCATATCAAGGGGAAGATTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGACCAGATGAAGCAGAACTCTTCGCCAAGTCTGCACAAAACGCGTACAAGCAATTCCGGGACAAGGCAGCCTTTTCCAGATCCATGACTGTGGATGAGATGGAGAAATTTGCACAAGGAAGGGTCTGGACCGGTAAAGATGCAGCATCCCATGGTTTAGTCGACGCTATCGGTGGATTTTCTCGGGCCGTTGCTATCGCTAAGCAGAAAGCCAACATTCCTCAAGACAGCCAGGTTAAGCTCGTGGAATTATCGAGACCGTCGCCGACACTACCGGAGATATTAAGTGGAGTAGGGAGTACGATTATCGGAGTTGACCGGACGGTGAAAGAACTGGTGCAAGAGCTTGCGTTGTCGGAAGGAGTTCAAGCTCGGATGGAAGGGATTATGTTGCAGAGAATGGAGGGAGCTTCTTATGGCAACCCCATCTTTAGTTTGATAAAAGATTACCTCAGTTCCTTCTAA 2103 45.32 MTLEWRKKNWLESAREKMAKLLLYLQAPHLVSSIHGGTLSFFLPKPFPFLSSSSTAQCRFAAALSFSLAPRRRRLSARAFDDSASEAKSVANEEEDAANEAPMSGESFRSRDEEYPSGEFEFEHFGAWRSFLVKLKMLIAVPWERVRKGSVLHMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGKFVVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYDNWLDKISSIKGKKRDDIESFINEGVYQIERLKEDGWITNIQYEDEVLSMLGERLGLPKDKKVPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSASSSGITGEQFIEKIRSVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAENLTLTGSIGVVTGKFNLGKLYEKIGFNKEVISRGRFAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKFAQGRVWTGKDAASHGLVDAIGGFSRAVAIAKQKANIPQDSQVKLVELSRPSPTLPEILSGVGSTIIGVDRTVKELVQELALSEGVQARMEGIMLQRMEGASYGNPIFSLIKDYLSSF 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31212861 31220664 - Sed0016449.1 Sed12g2036 732992

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2036 700 Pfam Peptidase family S49 468 619 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed12g2036 700 Pfam Peptidase family S49 217 365 IPR002142 GO:0006508(InterPro)|GO:0008233(InterPro)
Sed12g2036 700 Gene3D - 542 670 - -
Sed12g2036 700 SUPERFAMILY ClpP/crotonase 139 356 IPR029045 -
Sed12g2036 700 CDD S49_SppA_67K_type 152 365 IPR047217 -
Sed12g2036 700 MobiDBLite consensus disorder prediction 86 112 - -
Sed12g2036 700 Gene3D - 395 541 - -
Sed12g2036 700 Gene3D - 149 385 - -
Sed12g2036 700 SUPERFAMILY ClpP/crotonase 388 605 IPR029045 -
Sed12g2036 700 CDD S49_Sppa_N_C 399 614 IPR047272 -
Sed12g2036 700 PANTHER PROTEASE 4 68 700 - -
Sed12g2036 700 NCBIfam signal peptide peptidase SppA 400 615 IPR004635 GO:0006508(InterPro)|GO:0008233(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2036 K04773 - - csv:101211243 1141.33
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32