Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2048 ATGGAATCGGACGAAGATGATTTCGTTTTCTATGGAACGCCAATCCAGAGGGAGGAAGAGATCAACAGCCGGAAAAAGAAATCTGTGGCGGACGCTTCTGGTACCATGCGAGCCCTCCCTGCCTGGAAACAAGAGGTAAGAGATGAGGAAGGACGCAGAAGATTCCATGGGGCATTCACTGGTGGATTTTCTGCGGGCCATTACAACACAGTGGGCTCAAAAGAAGGTTGGGCTCCACAGTCATTCATGTCATCTCGAAAGAATCGAGCCGAAGTCAAGCAGCAAAATATTTTAAATTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGTCGAGGCCTGGGGACATCTCACCAGTTTGATACATTCGGATTCACGGCAGTGGAGCTTGCTCGTAAACAAGCAGAAAAGGAGCAACAACAGAGGCCATCTGCTATTCCTGGACCTGTTCCTGATGAATTAGTTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTGTTAAAGATGGGATGGCGCCATGGACGTGCAATAAAGGACTCAAGAGATAATTCCCTTTATGATGCTCGAAGAGACGCTCGAAAAGCATTTCTAGCATTTTCAACAGGTGATACCAAATCGGAGATCCCCAATTCTGAATCATTTCAGGAGGATGATGGTGTTTCTCCTCAACTGGCCAAGGGTGATATTTCGTCTTCTAAGAGCACGCCAGTTTATGTCATCAACCCAAAACAGGATTTGCATGGTTTAGGTTTTGATCCTTACAAGCATGCACCTGAGTTTAGGGAAATGAAAAGAGCACGCACAGCTGGGAAACAGGAAGCTAACAGAAAATTATTCTCCACGAAAAACAATCTTTTTGGCTTTAGAACTGAGAGGGTTGCTTCCGGCTTTGGCATTGGTGCGCTTGAAGAACTTGATGTTGAAGATGAGGATGTCTATACCTCTGGTTATGAGTTTGAGGAAACATATGTACAAGAAGACGATGAACCACAACCACCTTCTTCTATTAAATTGATTACAGATGGTAAACAAAAGTTGATTGAAAGAAAAGTAGATGGTGTCTTGCGTGGGTTTAGAGTTGCATCAAACTCTTGCTACCAGTTAGAAAGGTTTGATCCTCCAGTAATACCTAAGAACTTTATACCCCACCACAAATTTGCGGGGCCTCTCAATGGTGGCTGTAAGCCAGCTGATAACCCTCCTGTCGAGGTTCCTCCTCCTGAGGATAATAATCTCAAACTTCTAATTGAAGGGATGGCAACGTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTACTGGAGGAGCTGGTCATGAGTATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCGCAAGGACCAACCTAAGCATCAATCTGATGATAAATTGTCCCAAAACATGGAGAAGATGACAGCCGAAATTCGTGGAAAAATCCTTGGTGAAAGGCCTTTGGCAAGAAGCTCGAAAGAGTTAAATCCTCCTGCTGCTTCTGATGGTGTCCATGTTCAATATAATCTTTCAGATACGTTTATGAAACCTACGTCATCCGGTGGAATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCAAAGCAAGAAAGATTTGAATATTTTTTAAAGGAGAAGTACCAGGGAGGCCTGCGCACTGCTGCTCCTGTTGGACCTATTAACATGTCAGAAGCAGCTCGTGCACGTGAGCGCTTGGACTTTGAGGCTGCTGCAGAGGCAATCGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCCGAGAACTTTGTGGATTTTTTAGCCATTGGAGGAATGCAGTTTACTTCCGGTGGCGTAGAGGAAGTGAAAGATACGAAATTAGACGATTTACTTACGGAGAAAATGTTCCCAAAACGGGAAGAATATCAGTGGCGTCCGGCTCCAATTTTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCTGCTCGTAGGATAAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCGACAAAGATAGATGAACCTTTAACCTCATCCCTTTCTTCATTATCTCAATCAAATGCTGAAGAAAAGGACAAAGATGCATCAGGAAATGTAAATGATAAAGAAATAGAAGTTGAATGTGTTGATCGACCTGTTGACCTCTATAAGGCTATTTTCTCTGATGAGTCTGAGGAAGAAGAAAGTACATCAACTCTCAAGCAAGCTGAGGATCCTGAAAAGAAAGTTGAAGTGGCTACTACAGCGCTAAACCGTTTGATTGCGGGCGACTTTTTGGAATCTTTGGGTAAAGAACTGGGGCTCGAACTGCCTCCAGATCTTCCTCCAGCAAAGAAGGGCCGAACCGCTGCTCCTCAGACAGAAGATGTACCTATTAGCAAACAAAATATCGACATCCTTCCACTTGAAGATAAGACTTATCCCACCCCACCATCCACTGGGGTTCCATGGGACCGCAGAAAAGCAGGCACCTCGGAACTTAATCTAAATGGCAGAAAAGAAGACAACAAAGTCGACCATAACTCAGCTGGAACTGGTGGTAAAAATATCGAGACTGGTATTTCCAAGGAAAATTCGGGTAAATTTTATGAAGAAAAGATGTACAAGGAGGATAGAAAGAAGCGAGCTGATGTTCATCGTGATTGGAGCAACAACTCATTATCAGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGGCACAAGTATAAAAGTAGTGACTCAGATGATAGTGCATCAAGCGATTATCATTCTAAAGACCACTCCAGATCACGAGATAGAAAGAAAGGATCTTCTCATGAAAAGAAGAGCTCGAGAAAACACTCGAAACATCACAAGCGCAGACATAGAGATTCATCCCTTAGAGATCATCATCGCTCTGGAAAAGATCGTACAGTATCTGATAGAGAGAAACATAGACGGAGAGATTGA 3006 43.35 MESDEDDFVFYGTPIQREEEINSRKKKSVADASGTMRALPAWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWAPQSFMSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSHQFDTFGFTAVELARKQAEKEQQQRPSAIPGPVPDELVVPAAESIGVKLLLKMGWRHGRAIKDSRDNSLYDARRDARKAFLAFSTGDTKSEIPNSESFQEDDGVSPQLAKGDISSSKSTPVYVINPKQDLHGLGFDPYKHAPEFREMKRARTAGKQEANRKLFSTKNNLFGFRTERVASGFGIGALEELDVEDEDVYTSGYEFEETYVQEDDEPQPPSSIKLITDGKQKLIERKVDGVLRGFRVASNSCYQLERFDPPVIPKNFIPHHKFAGPLNGGCKPADNPPVEVPPPEDNNLKLLIEGMATLVARCGKLFEDLSREKNKSNPLFSFLTGGAGHEYYSRKLWEEQLKRKDQPKHQSDDKLSQNMEKMTAEIRGKILGERPLARSSKELNPPAASDGVHVQYNLSDTFMKPTSSGGMPEVVKPFKDDPAKQERFEYFLKEKYQGGLRTAAPVGPINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAENFVDFLAIGGMQFTSGGVEEVKDTKLDDLLTEKMFPKREEYQWRPAPILCKRFDLIDPYMGKPPPARRIRSKLDTLIFTSNSVKSTKIDEPLTSSLSSLSQSNAEEKDKDASGNVNDKEIEVECVDRPVDLYKAIFSDESEEEESTSTLKQAEDPEKKVEVATTALNRLIAGDFLESLGKELGLELPPDLPPAKKGRTAAPQTEDVPISKQNIDILPLEDKTYPTPPSTGVPWDRRKAGTSELNLNGRKEDNKVDHNSAGTGGKNIETGISKENSGKFYEEKMYKEDRKKRADVHRDWSNNSLSEDEKRRKRSRRRHKYKSSDSDDSASSDYHSKDHSRSRDRKKGSSHEKKSSRKHSKHHKRRHRDSSLRDHHRSGKDRTVSDREKHRRRD 1001
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31313577 31324874 - Sed0011411.1 Sed12g2048 733004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2048 1001 Pfam Surp module 416 463 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 953 980 - -
Sed12g2048 1001 MobiDBLite consensus disorder prediction 700 724 - -
Sed12g2048 1001 SUPERFAMILY Surp module (SWAP domain) 395 465 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 827 846 - -
Sed12g2048 1001 Pfam Protein of unknown function (DUF1604) 39 118 IPR011666 GO:0006397(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 883 918 - -
Sed12g2048 1001 SMART surpneu2 414 466 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 746 765 - -
Sed12g2048 1001 MobiDBLite consensus disorder prediction 851 866 - -
Sed12g2048 1001 Gene3D Surp module 395 470 IPR035967 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 981 995 - -
Sed12g2048 1001 MobiDBLite consensus disorder prediction 851 1001 - -
Sed12g2048 1001 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 2 974 - GO:0003723(PANTHER)|GO:0005634(PANTHER)
Sed12g2048 1001 FunFam G patch domain-containing protein TGH 380 470 - -
Sed12g2048 1001 MobiDBLite consensus disorder prediction 208 233 - -
Sed12g2048 1001 MobiDBLite consensus disorder prediction 867 881 - -
Sed12g2048 1001 ProSiteProfiles SURP motif repeat profile. 416 460 IPR000061 GO:0003723(InterPro)|GO:0006396(InterPro)
Sed12g2048 1001 MobiDBLite consensus disorder prediction 928 952 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2048 K13123 - - csv:101222702 1514.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33