Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2049 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAA 471 44.59 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31327734 31331277 + Sed0008282.1 Sed12g2049 733005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2049 156 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982(InterPro)
Sed12g2049 156 FunFam Negative cofactor 2 beta 6 143 - -
Sed12g2049 156 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Sed12g2049 156 MobiDBLite consensus disorder prediction 133 156 - -
Sed12g2049 156 MobiDBLite consensus disorder prediction 140 156 - -
Sed12g2049 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sed12g2049 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2049 K21751 - - csv:101214627 301.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2049 Sed-Chr12:31327734 Sed12g2050 Sed-Chr12:31327734 3.00E-80 tandem
Sed12g2049 Sed-Chr12:31327734 Sed08g0326 Sed-Chr8:1960580 9.30E-74 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g2049 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 85.2 7.0e-64 241.1
Sed12g2050 . 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 83.0 2.0e-63 239.6
Sed08g0326 . 1 154 CCAAT-DR1 Transcription Factor Family AT5G08190 79.9 2.3e-59 226.1
Sed12g2049 . 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 84.1 5.1e-67 251.5
Sed12g2050 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.9 2.8e-65 245.7
Sed08g0326 . 1 154 CCAAT-DR1 Transcription Factor Family AT5G23090 79.4 9.9e-63 237.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40274 PF00808 CBFD_NFYB_HMF 3.00E-22 CL0012 Sed TF