Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2049 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAA 471 44.59 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31327734 31331277 + Sed0008282.1 Sed12g2049 733005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2049 156 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982(InterPro)
Sed12g2049 156 FunFam Negative cofactor 2 beta 6 143 - -
Sed12g2049 156 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
Sed12g2049 156 MobiDBLite consensus disorder prediction 133 156 - -
Sed12g2049 156 MobiDBLite consensus disorder prediction 140 156 - -
Sed12g2049 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sed12g2049 156 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2049 Sed-Chr12:31327734 Sed12g2050 Sed-Chr12:31327734 3.00E-80 tandem
Sed12g2049 Sed-Chr12:31327734 Sed08g0326 Sed-Chr8:1960580 9.30E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40274 PF00808 CBFD_NFYB_HMF 3.00E-22 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2049 K21751 - csv:101214627 301.982