Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2050 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCAACTATGACTAAAATTATTAAAGAAATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTCATAAACCTTGTATCGTCCGAATCTAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTTAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATCGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGAAAATTTACCAGCAAGACTCGTTGAAAGGTGGAAAGTGGAGCAACGGAGCCGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACTGCTCCGAAGCAACCGGAGCCCGAGCAAAGTTTAGAGAGCTAA 483 44.1 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMKIYQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31327734 31331277 + Sed0008282.2 Sed12g2050 733006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2050 160 PANTHER PROTEIN DR1 HOMOLOG 1 158 IPR044255 -
Sed12g2050 160 MobiDBLite consensus disorder prediction 144 160 - -
Sed12g2050 160 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982(InterPro)
Sed12g2050 160 MobiDBLite consensus disorder prediction 138 160 - -
Sed12g2050 160 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Sed12g2050 160 Gene3D Histone, subunit A 4 149 IPR009072 GO:0046982(InterPro)
Sed12g2050 160 FunFam Negative cofactor 2 beta 6 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2050 K21751 - - csv:101214627 296.204
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g0326 Sed-Chr8:1960580 Sed12g2050 Sed-Chr12:31327734 3.00E-72 dispersed
Sed12g2049 Sed-Chr12:31327734 Sed12g2050 Sed-Chr12:31327734 3.00E-80 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g2049 . 1 149 CCAAT-DR1 Transcription Factor Family AT5G08190 85.2 7.0e-64 241.1
Sed12g2050 . 1 153 CCAAT-DR1 Transcription Factor Family AT5G08190 83.0 2.0e-63 239.6
Sed08g0326 . 1 154 CCAAT-DR1 Transcription Factor Family AT5G08190 79.9 2.3e-59 226.1
Sed12g2049 . 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 84.1 5.1e-67 251.5
Sed12g2050 . 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 81.9 2.8e-65 245.7
Sed08g0326 . 1 154 CCAAT-DR1 Transcription Factor Family AT5G23090 79.4 9.9e-63 237.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004258 4 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 0 3 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40275 PF00808 CBFD_NFYB_HMF 3.20E-22 CL0012 Sed TF