Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2053 ATGGAACCTCGCCGATCCTCCCGAATCGTCAACCCTAAAGTTCGTCAGGTCGGATTCTTCACTCCAAACCCGCCGCCCCGATCCCTCTCCGTTCCTGCCGACTCCGCCGCCCCTTCTCCGCCGACCAATTCCCTCTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGACAACCTCGCCGCCGCTCGCTCCGCCGTCCTCCCCGTCCCCGCTCCCGCCACTTGGAGAACCTCCGCCGATCAGATCCATGTCGGCAGCTATAACCCCTCCGAAACCCTACTTGCTACCTCCCCTTCGAGCCGGGCCGGCGACGATGACCTGGATATGTCTGAGGATTCCTCCACCGGAGCTCTGTTTCCCCGGACTGGTTCCGGGAAGATTGCGTCGAGTTTTCCCGGCGTGGGAATTCATGTGGCGGCTAAGGAGAATTCGCCGGCGGTGGGTTTTAGGGTTTTGGAGGTTAACAAGCGTGCTGCTGGTGTTGCAGAAAAGAAGGGAGGGTCGTCCAGAGAAGTACAAAATCAACAGCCACCAAGTTCGAAACCCCTGAAAGAAAAAACAACAAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCGAGTAAGTCAGGTACTGGCCCTAGTAAAGTTGTGAAGCAGCCTCCGGCTATGAAAGATGGCACTGCTGCACCTTCAGTTGCATCTACCGACAAAAGAGGGGGTGATCGCTCACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCCCGAATGCAGTTTGATGATAAAAGTAGGGTAGATAAGGCTAAGAAGCGGGCAGTTTTCAGCCAAACTGAAGCTAGAAATAGAGTTGAATTATTTCGCCATTTACCACAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGATACCATTCATCCTGCCATTTACCAGGTTGGTTTACAGTATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTACTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTACGTGTCATTCTTCAATGAATGCAGGCCACTGTCTGTTAGCATGGGTAATGCAATTAGGTTTTTGAAAAACCGCATTGCTAAATTACCAGTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATAGATCGCTTTATCAATGAGAAAATTATCATTGCTGATGAGGTCATAGTTAGACATGCTGTTACCAAAATCAGGAATGGAGATGTTCTTCTCACATATGGATCATCATATTCTGTAGAGATGCTTTTATTATATGCTCATGAGCTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTCGAAGGGCAAGCATTGCTTCGCAGGCTCATAACGAGAGGCCTAAATTGTACCTATACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTAGGGGCTGCTTCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCGTATAAATTTCATGAAAGAGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGTTATCTCGAAGGTTCCAGGAAGGAAGGATATCAATTGTCTAGATAATTCGGCTGCTAAAGAACAACTGCAACGTCTAAATTTAATGTACGATGCCACGCCATCAGATTACATCTCAATGATTGTCACAGATTTTGGCATGATCCCGCCTACAAGCGTGCCAGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATATAA 1926 47.46 MEPRRSSRIVNPKVRQVGFFTPNPPPRSLSVPADSAAPSPPTNSLSPVMIPPPRHLSDNLAAARSAVLPVPAPATWRTSADQIHVGSYNPSETLLATSPSSRAGDDDLDMSEDSSTGALFPRTGSGKIASSFPGVGIHVAAKENSPAVGFRVLEVNKRAAGVAEKKGGSSREVQNQQPPSSKPLKEKTTKAERRALQEAQRAAKVSAKGEASKSGTGPSKVVKQPPAMKDGTAAPSVASTDKRGGDRSLDKERKKDAPPPRMQFDDKSRVDKAKKRAVFSQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYQVGLQYMAGDICGGNARCITMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPVNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAVTKIRNGDVLLTYGSSYSVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLITRGLNCTYTHINAISYVMHEVTRVFLGAASVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDVISKVPGRKDINCLDNSAAKEQLQRLNLMYDATPSDYISMIVTDFGMIPPTSVPVIVREYRREHLWI 641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31346234 31354424 - Sed0001506.1 Sed12g2053 733009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2053 641 MobiDBLite consensus disorder prediction 243 272 - -
Sed12g2053 641 MobiDBLite consensus disorder prediction 88 127 - -
Sed12g2053 641 MobiDBLite consensus disorder prediction 1 52 - -
Sed12g2053 641 MobiDBLite consensus disorder prediction 162 272 - -
Sed12g2053 641 Pfam Initiation factor 2 subunit family 334 624 IPR000649 GO:0044237(InterPro)
Sed12g2053 641 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 40 638 - -
Sed12g2053 641 MobiDBLite consensus disorder prediction 185 199 - -
Sed12g2053 641 MobiDBLite consensus disorder prediction 169 184 - -
Sed12g2053 641 Gene3D - 427 634 IPR042529 -
Sed12g2053 641 SUPERFAMILY NagB/RpiA/CoA transferase-like 287 634 IPR037171 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2053 Sed-Chr12:31346234 Sed12g2055 Sed-Chr12:31346234 1.60E-260 dispersed
Sed12g2053 Sed-Chr12:31346234 Sed12g2054 Sed-Chr12:31346234 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2053 K03680 - csv:101215104 1050.04