Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2054 | ATGGAACCTCGCCGATCCTCCCGAATCGTCAACCCTAAAGTTCGTCAGGTCGGATTCTTCACTCCAAACCCGCCGCCCCGATCCCTCTCCGTTCCTGCCGACTCCGCCGCCCCTTCTCCGCCGACCAATTCCCTCTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGACAACCTCGCCGCCGCTCGCTCCGCCGTCCTCCCCGTCCCCGCTCCCGCCACTTGGAGAACCTCCGCCGATCAGATCCATGTCGGCAGCTATAACCCCTCCGAAACCCTACTTGCTACCTCCCCTTCGAGCCGGGCCGGCGACGATGACCTGGATATGTCTGAGGATTCCTCCACCGGAGCTCTGTTTCCCCGGACTGGTTCCGGGAAGATTGCGTCGAGTTTTCCCGGCGTGGGAATTCATGTGGCGGCTAAGGAGAATTCGCCGGCGGTGGGTTTTAGGGTTTTGGAGGTTAACAAGCGTGCTGCTGGTGTTGCAGCAGAAAAGAAGGGAGGGTCGTCCAGAGAAGTACAAAATCAACAGCCACCAAGTTCGAAACCCCTGAAAGAAAAAACAACAAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCGAGTAAGTCAGGTACTGGCCCTAGTAAAGTTGTGAAGCAGCCTCCGGCTATGAAAGATGGCACTGCTGCACCTTCAGTTGCATCTACCGACAAAAGAGGGGGTGATCGCTCACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCCCGAATGCAGTTTGATGATAAAAGTAGGGTAGATAAGGCTAAGAAGCGGGCAGTTTTCAGCCAAACTGAAGCTAGAAATAGAGTTGAATTATTTCGCCATTTACCACAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGATACCATTCATCCTGCCATTTACCAGGTTGGTTTACAGTATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTACTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTACGTGTCATTCTTCAATGAATGCAGGCCACTGTCTGTTAGCATGGGTAATGCAATTAGGTTTTTGAAAAACCGCATTGCTAAATTACCAGTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATAGATCGCTTTATCAATGAGAAAATTATCATTGCTGATGAGGTCATAGTTAGACATGCTGTTACCAAAATCAGGAATGGAGATGTTCTTCTCACATATGGATCATCATATTCTGTAGAGATGCTTTTATTATATGCTCATGAGCTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTCGAAGGGCAAGCATTGCTTCGCAGGCTCATAACGAGAGGCCTAAATTGTACCTATACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTAGGGGCTGCTTCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCGTATAAATTTCATGAAAGAGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGTTATCTCGAAGGTTCCAGGAAGGAAGGATATCAATTGTCTAGATAATTCGGCTGCTAAAGAACAACTGCAACGTCTAAATTTAATGTACGATGCCACGCCATCAGATTACATCTCAATGATTGTCACAGATTTTGGCATGATCCCGCCTACAAGCGTGCCAGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATATAA | 1929 | 47.49 | MEPRRSSRIVNPKVRQVGFFTPNPPPRSLSVPADSAAPSPPTNSLSPVMIPPPRHLSDNLAAARSAVLPVPAPATWRTSADQIHVGSYNPSETLLATSPSSRAGDDDLDMSEDSSTGALFPRTGSGKIASSFPGVGIHVAAKENSPAVGFRVLEVNKRAAGVAAEKKGGSSREVQNQQPPSSKPLKEKTTKAERRALQEAQRAAKVSAKGEASKSGTGPSKVVKQPPAMKDGTAAPSVASTDKRGGDRSLDKERKKDAPPPRMQFDDKSRVDKAKKRAVFSQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYQVGLQYMAGDICGGNARCITMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPVNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAVTKIRNGDVLLTYGSSYSVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLITRGLNCTYTHINAISYVMHEVTRVFLGAASVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDVISKVPGRKDINCLDNSAAKEQLQRLNLMYDATPSDYISMIVTDFGMIPPTSVPVIVREYRREHLWI | 642 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 31346234 | 31354424 | - | Sed0001506.2 | Sed12g2054 | 733010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 186 | 200 | - | - | |
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 244 | 275 | - | - | |
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Sed12g2054 | 642 | Pfam | Initiation factor 2 subunit family | 335 | 625 | IPR000649 | GO:0044237(InterPro) | |
Sed12g2054 | 642 | SUPERFAMILY | NagB/RpiA/CoA transferase-like | 288 | 635 | IPR037171 | - | |
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 88 | 126 | - | - | |
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
Sed12g2054 | 642 | Gene3D | - | 428 | 635 | IPR042529 | - | |
Sed12g2054 | 642 | PANTHER | TRANSLATION INITIATION FACTOR EIF-2B | 40 | 639 | - | - | |
Sed12g2054 | 642 | MobiDBLite | consensus disorder prediction | 163 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed12g2054 | Sed-Chr12:31346234 | Sed12g2057 | Sed-Chr12:31363803 | 3.30E-210 | dispersed | |
Sed12g2053 | Sed-Chr12:31346234 | Sed12g2054 | Sed-Chr12:31346234 | 0.00E+00 | tandem | |
Sed12g2054 | Sed-Chr12:31346234 | Sed12g2055 | Sed-Chr12:31346234 | 1.60E-260 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2054 | K03680 | - | csv:101215104 | 1045.42 |