Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2054 ATGGAACCTCGCCGATCCTCCCGAATCGTCAACCCTAAAGTTCGTCAGGTCGGATTCTTCACTCCAAACCCGCCGCCCCGATCCCTCTCCGTTCCTGCCGACTCCGCCGCCCCTTCTCCGCCGACCAATTCCCTCTCTCCGGTCATGATTCCCCCTCCCCGTCATCTCTCCGACAACCTCGCCGCCGCTCGCTCCGCCGTCCTCCCCGTCCCCGCTCCCGCCACTTGGAGAACCTCCGCCGATCAGATCCATGTCGGCAGCTATAACCCCTCCGAAACCCTACTTGCTACCTCCCCTTCGAGCCGGGCCGGCGACGATGACCTGGATATGTCTGAGGATTCCTCCACCGGAGCTCTGTTTCCCCGGACTGGTTCCGGGAAGATTGCGTCGAGTTTTCCCGGCGTGGGAATTCATGTGGCGGCTAAGGAGAATTCGCCGGCGGTGGGTTTTAGGGTTTTGGAGGTTAACAAGCGTGCTGCTGGTGTTGCAGCAGAAAAGAAGGGAGGGTCGTCCAGAGAAGTACAAAATCAACAGCCACCAAGTTCGAAACCCCTGAAAGAAAAAACAACAAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCGAGTAAGTCAGGTACTGGCCCTAGTAAAGTTGTGAAGCAGCCTCCGGCTATGAAAGATGGCACTGCTGCACCTTCAGTTGCATCTACCGACAAAAGAGGGGGTGATCGCTCACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCCCGAATGCAGTTTGATGATAAAAGTAGGGTAGATAAGGCTAAGAAGCGGGCAGTTTTCAGCCAAACTGAAGCTAGAAATAGAGTTGAATTATTTCGCCATTTACCACAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGATACCATTCATCCTGCCATTTACCAGGTTGGTTTACAGTATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTACTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTACGTGTCATTCTTCAATGAATGCAGGCCACTGTCTGTTAGCATGGGTAATGCAATTAGGTTTTTGAAAAACCGCATTGCTAAATTACCAGTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATAGATCGCTTTATCAATGAGAAAATTATCATTGCTGATGAGGTCATAGTTAGACATGCTGTTACCAAAATCAGGAATGGAGATGTTCTTCTCACATATGGATCATCATATTCTGTAGAGATGCTTTTATTATATGCTCATGAGCTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTCGAAGGGCAAGCATTGCTTCGCAGGCTCATAACGAGAGGCCTAAATTGTACCTATACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTAGGGGCTGCTTCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCGTATAAATTTCATGAAAGAGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGTTATCTCGAAGGTTCCAGGAAGGAAGGATATCAATTGTCTAGATAATTCGGCTGCTAAAGAACAACTGCAACGTCTAAATTTAATGTACGATGCCACGCCATCAGATTACATCTCAATGATTGTCACAGATTTTGGCATGATCCCGCCTACAAGCGTGCCAGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATATAA 1929 47.49 MEPRRSSRIVNPKVRQVGFFTPNPPPRSLSVPADSAAPSPPTNSLSPVMIPPPRHLSDNLAAARSAVLPVPAPATWRTSADQIHVGSYNPSETLLATSPSSRAGDDDLDMSEDSSTGALFPRTGSGKIASSFPGVGIHVAAKENSPAVGFRVLEVNKRAAGVAAEKKGGSSREVQNQQPPSSKPLKEKTTKAERRALQEAQRAAKVSAKGEASKSGTGPSKVVKQPPAMKDGTAAPSVASTDKRGGDRSLDKERKKDAPPPRMQFDDKSRVDKAKKRAVFSQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYQVGLQYMAGDICGGNARCITMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPVNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAVTKIRNGDVLLTYGSSYSVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLITRGLNCTYTHINAISYVMHEVTRVFLGAASVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDVISKVPGRKDINCLDNSAAKEQLQRLNLMYDATPSDYISMIVTDFGMIPPTSVPVIVREYRREHLWI 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31346234 31354424 - Sed0001506.2 Sed12g2054 733010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2054 642 MobiDBLite consensus disorder prediction 186 200 - -
Sed12g2054 642 MobiDBLite consensus disorder prediction 244 275 - -
Sed12g2054 642 MobiDBLite consensus disorder prediction 1 52 - -
Sed12g2054 642 Pfam Initiation factor 2 subunit family 335 625 IPR000649 GO:0044237(InterPro)
Sed12g2054 642 SUPERFAMILY NagB/RpiA/CoA transferase-like 288 635 IPR037171 -
Sed12g2054 642 MobiDBLite consensus disorder prediction 88 126 - -
Sed12g2054 642 MobiDBLite consensus disorder prediction 170 185 - -
Sed12g2054 642 Gene3D - 428 635 IPR042529 -
Sed12g2054 642 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 40 639 - -
Sed12g2054 642 MobiDBLite consensus disorder prediction 163 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2054 Sed-Chr12:31346234 Sed12g2057 Sed-Chr12:31363803 3.30E-210 dispersed
Sed12g2053 Sed-Chr12:31346234 Sed12g2054 Sed-Chr12:31346234 0.00E+00 tandem
Sed12g2054 Sed-Chr12:31346234 Sed12g2055 Sed-Chr12:31346234 1.60E-260 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2054 K03680 - csv:101215104 1045.42