Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2055 ATGGAACTTGCATTGGGATTACTGATTTCTCATTTCTACTACTTTGTTCTAGCAGAAAAGAAGGGAGGGTCGTCCAGAGAAGTACAAAATCAACAGCCACCAAGTTCGAAACCCCTGAAAGAAAAAACAACAAAGGCTGAAAGACGGGCTCTGCAGGAGGCACAACGAGCAGCAAAAGTTTCTGCAAAAGGTGAGGCGAGTAAGTCAGGTACTGGCCCTAGTAAAGTTGTGAAGCAGCCTCCGGCTATGAAAGATGGCACTGCTGCACCTTCAGTTGCATCTACCGACAAAAGAGGGGGTGATCGCTCACTTGATAAAGAAAGGAAGAAAGATGCTCCCCCTCCCCGAATGCAGTTTGATGATAAAAGTAGGGTAGATAAGGCTAAGAAGCGGGCAGTTTTCAGCCAAACTGAAGCTAGAAATAGAGTTGAATTATTTCGCCATTTACCACAATATGAGCAGGGAACTCAGCTTCCTGATCTTGTGTCGAAGTTTTTCCAACTTGATACCATTCATCCTGCCATTTACCAGGTTGGTTTACAGTATATGGCCGGAGATATATGTGGAGGCAATGCTCGTTGTATTACTATGCTTCATGCATTTCAACAGGCCATCAAAGACTACTCAACTCCGCCACAGAAGTCTCTGGGTAGAGATTTAACTGCAAAAATTGGTGGCTACGTGTCATTCTTCAATGAATGCAGGCCACTGTCTGTTAGCATGGGTAATGCAATTAGGTTTTTGAAAAACCGCATTGCTAAATTACCAGTGAATCTTCCAGAATCTGAAGTAAAAGCTACACTTTGCTCAGATATAGATCGCTTTATCAATGAGAAAATTATCATTGCTGATGAGGTCATAGTTAGACATGCTGTTACCAAAATCAGGAATGGAGATGTTCTTCTCACATATGGATCATCATATTCTGTAGAGATGCTTTTATTATATGCTCATGAGCTCGGAAAAGAATTCCGTGTTGTGGTGGTGGATTCCCGACCAAAACTCGAAGGGCAAGCATTGCTTCGCAGGCTCATAACGAGAGGCCTAAATTGTACCTATACTCATATAAATGCTATTTCTTACGTGATGCACGAAGTAACACGAGTTTTTCTAGGGGCTGCTTCAGTATTATCTAATGGAACTGTATATTCAAGAGTGGGAACTGCAGGTGTTGCCATGGTTGCTAATGCATTCCATGTTCCAGTCTTAATCTGCTGCGAAGCGTATAAATTTCATGAAAGAGTACAGCTTGACTCAATATGTTTCAATGAATTAGGTGATCCAGATGTTATCTCGAAGGTTCCAGGAAGGAAGGATATCAATTGTCTAGATAATTCGGCTGCTAAAGAACAACTGCAACGTCTAAATTTAATGTACGATGCCACGCCATCAGATTACATCTCAATGATTGTCACAGATTTTGGCATGATCCCGCCTACAAGCGTGCCAGTGATCGTACGCGAGTATCGGAGAGAGCACCTGTGGATATAA 1491 42.39 MELALGLLISHFYYFVLAEKKGGSSREVQNQQPPSSKPLKEKTTKAERRALQEAQRAAKVSAKGEASKSGTGPSKVVKQPPAMKDGTAAPSVASTDKRGGDRSLDKERKKDAPPPRMQFDDKSRVDKAKKRAVFSQTEARNRVELFRHLPQYEQGTQLPDLVSKFFQLDTIHPAIYQVGLQYMAGDICGGNARCITMLHAFQQAIKDYSTPPQKSLGRDLTAKIGGYVSFFNECRPLSVSMGNAIRFLKNRIAKLPVNLPESEVKATLCSDIDRFINEKIIIADEVIVRHAVTKIRNGDVLLTYGSSYSVEMLLLYAHELGKEFRVVVVDSRPKLEGQALLRRLITRGLNCTYTHINAISYVMHEVTRVFLGAASVLSNGTVYSRVGTAGVAMVANAFHVPVLICCEAYKFHERVQLDSICFNELGDPDVISKVPGRKDINCLDNSAAKEQLQRLNLMYDATPSDYISMIVTDFGMIPPTSVPVIVREYRREHLWI 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31346234 31354424 - Sed0001506.3 Sed12g2055 733011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2055 496 Pfam Initiation factor 2 subunit family 189 479 IPR000649 GO:0044237(InterPro)
Sed12g2055 496 Gene3D - 282 489 IPR042529 -
Sed12g2055 496 MobiDBLite consensus disorder prediction 98 127 - -
Sed12g2055 496 MobiDBLite consensus disorder prediction 24 39 - -
Sed12g2055 496 SUPERFAMILY NagB/RpiA/CoA transferase-like 142 489 IPR037171 -
Sed12g2055 496 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 19 493 - -
Sed12g2055 496 MobiDBLite consensus disorder prediction 40 54 - -
Sed12g2055 496 MobiDBLite consensus disorder prediction 22 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed12g2053 Sed-Chr12:31346234 Sed12g2055 Sed-Chr12:31346234 1.60E-260 dispersed
Sed12g2055 Sed-Chr12:31346234 Sed12g2057 Sed-Chr12:31363803 4.10E-208 proximal
Sed12g2054 Sed-Chr12:31346234 Sed12g2055 Sed-Chr12:31346234 1.60E-260 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2055 K03680 - csv:101215104 844.728