Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2061 ATGACTTGGAGGAGAGTGTTGATGTCCGTACAGGCACTTCTGGCCCACGGTTCACTCTTCTGTTTCACGCTCTTGCTCGTTCTCAAGCTCGATCATTTCGTCTCCAACAGTTGGTGGACTATTTTTTTCCCACTTTGGGTGTTTCATGCGGTTGTTGCTCGAGGAAGGTTCTCGTTACCTGCCCCATCACTTCCTCATAACCGTCATTGGGCACCGTGCCATGCTGTTGTTGCGACGCCTTTTCTTGTAGCATTTGAATTACTTCTTTGTATATACCTTGAGAGCCTATCTGTTTATGGTTTCGCTGCGGTGAATTTGAAGATTGTCTTTCTACCGTTGCTGGCATTTGAATTAGTTATTTTAATAGATAATTTCAGAATGTGTAGGTCACTGATGCCCGGTGACGATGAAAGCATGAGTGATGAGGCAGTATGGGAGACTCTTCCTCACTTTTGGGTTGCCATTTCAATGATCTTCTTTCTTGCTGCTACAGTATTTACTGTACTGAAGCTAAGTGGGAGTGTTGGTGCTCTTGGCTATTGGGACTTATTTGTTAATTTTGGCATCGCCGAATGCTTTGCCTTTCTTGTTTGTACAAAGTGGTCCAACCCTGCGATTCATAGAAATGTTCAAACAAGAGAAAGTTGTTCATCATCAGCAGTAGTCAGATATCTAAACTGGAACAGTGGTCTAATAGTTTATCCAGAGCAGGATCAGCATCAGGATAGAATGTGTGGCCTTCAAGACATTGGAGGCCATATCATGAAAATTCCCATAATTGTTTTTCAAGTCCTACTCTGCATGTATTTAGAGGGAACACCTGCAGCTGCAAAAAATATTCCACTTCCAGTACTTTTCTCTCCCCTTTTTATACTGCAAGGTGCTGCTGTTATTTATGCTGCCTCTAGGCTGTTAGAGAAAGTTATACTTCTCTTAAGAGGTGGATCTGGCACAGCATTGTATTTCAGTATTTCTGCTAGGGCTCATGCCTGCTTGGAGTTCTTTCATCATGGTTCAAGGCTATTGGGGTGGTGGTCTATCGATGAAGGTAGCCGAGAAGAGCAGGCACGATTGTACCATGAGGGTGCTTCTGGGTACAATACTTTTAGTGGATTCCCTCCTGAGATTGTAAAGAAAATGCCCAAGAAAGAGCTTGCTGAGGAGGTATGGCGCCTTCAAGCGGCCCTTGGGGAGCAGTCAGAAATCACCAAATACAGTCAGCAGGAATATGAAAGACTTCAAAATGAAAAGGTGTTGTGTCGGGTTTGTTTCGAGGGAGAAATCAGCGTGGTTCTTCTTCCGTGTAGGCATCGCGTACTATGCAGCACCTGCTGTGAGAAATGTAAAAAATGCCCAATATGTCGGGTCTTTATCGAAGAGCGGTTACCGGTATTCGATGTTTAG 1404 44.09 MTWRRVLMSVQALLAHGSLFCFTLLLVLKLDHFVSNSWWTIFFPLWVFHAVVARGRFSLPAPSLPHNRHWAPCHAVVATPFLVAFELLLCIYLESLSVYGFAAVNLKIVFLPLLAFELVILIDNFRMCRSLMPGDDESMSDEAVWETLPHFWVAISMIFFLAATVFTVLKLSGSVGALGYWDLFVNFGIAECFAFLVCTKWSNPAIHRNVQTRESCSSSAVVRYLNWNSGLIVYPEQDQHQDRMCGLQDIGGHIMKIPIIVFQVLLCMYLEGTPAAAKNIPLPVLFSPLFILQGAAVIYAASRLLEKVILLLRGGSGTALYFSISARAHACLEFFHHGSRLLGWWSIDEGSREEQARLYHEGASGYNTFSGFPPEIVKKMPKKELAEEVWRLQAALGEQSEITKYSQQEYERLQNEKVLCRVCFEGEISVVLLPCRHRVLCSTCCEKCKKCPICRVFIEERLPVFDV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31406526 31414584 + Sed0019937.1 Sed12g2061 733017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2061 467 SUPERFAMILY RING/U-box 411 461 - -
Sed12g2061 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 465 IPR013083 -
Sed12g2061 467 FunFam Kinesin-like protein KIN-7D, mitochondrial 397 465 - -
Sed12g2061 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Sed12g2061 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Sed12g2061 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Sed12g2061 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed11g1584 Sed-Chr11:31352017 Sed12g2061 Sed-Chr12:31406526 1.80E-173 transposed
Sed12g2061 Sed-Chr12:31406526 Sed08g0334 Sed-Chr8:2035001 3.30E-252 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2061 - - - 0.0