Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2071 | ATGCGTATGAGCTGCAATGGATGCCGAGTTCTTCGCAAAGGGTGCAGTGAAGGCTGCTCGATCAGACCCTGCCTTCAATGGATCAAAACCCCGCAATCCCAATCCAACGCCACCTTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGCCTCCTCAACCTCATCAACGCCGGCCCCGATCACCTCCGCCCCGCGATCTTTAAATCCTTGCTATTCGAGGCCTGTGGCCGGATCGTCAACCCCATTTCCGGCTCGGCCGGCTTGATGTCCGCCGGAAACTGGCAGCTCTGTCACGACGCCGTCGACGCAGTTCTCAAGGGCCAACCAATCCTCCCCGTCTCTTCCGAGATGGAACCGACGCTTACGGACCCACCGGTGAAGGCCTGCGACATCCGCCACGTCTCCAAACAGCAAGGCTCCGCGCTCCGGCAGATCAAGACGCGGCGGCGGTTCAAGCGATCGCCGAACAAGCCGACCCGAGTTGGATCGGAGCGCCGGGTTTTGAAGTTCGAGTTGGATAACTTTGTGGGCCATGAGTCGTCGGAGATGGACGGCGGCGGCGGCGGCGACGATGCGGAATGTTTGTCGGTGGAAACTCAGGCTTCTGCGGTGGGCCAGGGTAGTGACGTGGAGTTGGAGCTTACCTTGGGGTTTGGGCACAGTCGTTGCTGA | 669 | 60.84 | MRMSCNGCRVLRKGCSEGCSIRPCLQWIKTPQSQSNATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPISGSAGLMSAGNWQLCHDAVDAVLKGQPILPVSSEMEPTLTDPPVKACDIRHVSKQQGSALRQIKTRRRFKRSPNKPTRVGSERRVLKFELDNFVGHESSEMDGGGGGDDAECLSVETQASAVGQGSDVELELTLGFGHSRC | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 31483170 | 31484325 | - | Sed0017984.1 | Sed12g2071 | 733027 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2071 | 222 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 38 | 1 | 217 | - | GO:0010468(PANTHER) | |
Sed12g2071 | 222 | ProSiteProfiles | LOB domain profile. | 3 | 109 | IPR004883 | - | |
Sed12g2071 | 222 | Pfam | Lateral organ boundaries (LOB) domain | 4 | 100 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed10g0704 | Sed-Chr10:4931641 | Sed12g2071 | Sed-Chr12:31483170 | 2.30E-38 | dispersed | |
Sed12g2071 | Sed-Chr12:31483170 | Sed14g0907 | Sed-Chr14:18051836 | 3.40E-37 | dispersed | |
Sed05g2663 | Sed-Chr5:38101877 | Sed12g2071 | Sed-Chr12:31483170 | 5.10E-64 | transposed | |
Sed12g2071 | Sed-Chr12:31483170 | Sed07g2092 | Sed-Chr7:36329658 | 9.00E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40277 | PF03195 | LOB | 1.00E-21 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2071 | - | - | - | 0.0 |