Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2071 ATGCGTATGAGCTGCAATGGATGCCGAGTTCTTCGCAAAGGGTGCAGTGAAGGCTGCTCGATCAGACCCTGCCTTCAATGGATCAAAACCCCGCAATCCCAATCCAACGCCACCTTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGCCTCCTCAACCTCATCAACGCCGGCCCCGATCACCTCCGCCCCGCGATCTTTAAATCCTTGCTATTCGAGGCCTGTGGCCGGATCGTCAACCCCATTTCCGGCTCGGCCGGCTTGATGTCCGCCGGAAACTGGCAGCTCTGTCACGACGCCGTCGACGCAGTTCTCAAGGGCCAACCAATCCTCCCCGTCTCTTCCGAGATGGAACCGACGCTTACGGACCCACCGGTGAAGGCCTGCGACATCCGCCACGTCTCCAAACAGCAAGGCTCCGCGCTCCGGCAGATCAAGACGCGGCGGCGGTTCAAGCGATCGCCGAACAAGCCGACCCGAGTTGGATCGGAGCGCCGGGTTTTGAAGTTCGAGTTGGATAACTTTGTGGGCCATGAGTCGTCGGAGATGGACGGCGGCGGCGGCGGCGACGATGCGGAATGTTTGTCGGTGGAAACTCAGGCTTCTGCGGTGGGCCAGGGTAGTGACGTGGAGTTGGAGCTTACCTTGGGGTTTGGGCACAGTCGTTGCTGA 669 60.84 MRMSCNGCRVLRKGCSEGCSIRPCLQWIKTPQSQSNATFFLAKFYGRAGLLNLINAGPDHLRPAIFKSLLFEACGRIVNPISGSAGLMSAGNWQLCHDAVDAVLKGQPILPVSSEMEPTLTDPPVKACDIRHVSKQQGSALRQIKTRRRFKRSPNKPTRVGSERRVLKFELDNFVGHESSEMDGGGGGDDAECLSVETQASAVGQGSDVELELTLGFGHSRC 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31483170 31484325 - Sed0017984.1 Sed12g2071 733027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2071 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 217 - GO:0010468(PANTHER)
Sed12g2071 222 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Sed12g2071 222 Pfam Lateral organ boundaries (LOB) domain 4 100 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed10g0704 Sed-Chr10:4931641 Sed12g2071 Sed-Chr12:31483170 2.30E-38 dispersed
Sed12g2071 Sed-Chr12:31483170 Sed14g0907 Sed-Chr14:18051836 3.40E-37 dispersed
Sed05g2663 Sed-Chr5:38101877 Sed12g2071 Sed-Chr12:31483170 5.10E-64 transposed
Sed12g2071 Sed-Chr12:31483170 Sed07g2092 Sed-Chr7:36329658 9.00E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40277 PF03195 LOB 1.00E-21 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2071 - - - 0.0