Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2081 ATGGATTCTGAGTTTCAATCCTTCAAATCTTCTTTCTCATTCCCCAATTTCATGGATCCAAATTCAGACCTAATGGCCTTGTGTTCTACTCCAAACCCAATTCTTCTAGAAAACCAGACTCAAAATTACACAAATTTCTTACCATTTTCAAATGACATGTTTTTCAATAACCCAAATCACAATTTGGGAGATTCTAGTAGCTTCCAGATTCTTCACCAATCTCCTCTTGATCATGCCCCTGTTTCTGCAGAGTTTCATGAGATTAAGAAGAGAAAATCAATGGAGGTTTCTGAGTGCAGCTCTGGGGTTTCTACTCCTCAAGTTTCTGAAAATGGGGTTTTCAAGACTCAAAATAGTTTTGGAAAAGGGAAGAGGTTGAAAAGTATAGGGAAAGATGAAGAGAAATCAAATAGAGAAGTTGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGTTACAAGACCATGGGCATGGCAGTTATGTTGGATGAGATAATTAATTATGTCCAGTCTCTGCAGAATCAAGTGGAGTTTCTATCCATGAAACTAGCTGCAGCTAGCTCTTTCTATGACTTTAACTCGGAATCCGATTCGATATCGAAACTACAGAGGGCAAAGGTTCATGAAGCAAAAGAATTGGAGAAATTGATGAGAGAAGGATATGGAGGAGTAGCTTGCTTCCACTCAACTTTGCCTCTTTGA 783 39.08 MDSEFQSFKSSFSFPNFMDPNSDLMALCSTPNPILLENQTQNYTNFLPFSNDMFFNNPNHNLGDSSSFQILHQSPLDHAPVSAEFHEIKKRKSMEVSECSSGVSTPQVSENGVFKTQNSFGKGKRLKSIGKDEEKSNREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLAAASSFYDFNSESDSISKLQRAKVHEAKELEKLMREGYGGVACFHSTLPL 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31556799 31558928 - Sed0028157.1 Sed12g2081 733037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2081 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 217 IPR036638 GO:0046983(InterPro)
Sed12g2081 260 FunFam transcription factor BEE 3-like 146 217 - -
Sed12g2081 260 Coils Coil 226 246 - -
Sed12g2081 260 CDD bHLH_AtBPE_like 139 224 - -
Sed12g2081 260 Gene3D - 146 217 IPR036638 GO:0046983(InterPro)
Sed12g2081 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983(InterPro)
Sed12g2081 260 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983(InterPro)
Sed12g2081 260 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 94 227 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Sed12g2081 260 SMART finulus 155 205 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1169 Sed-Chr3:7291405 Sed12g2081 Sed-Chr12:31556799 3.10E-25 dispersed
Sed12g2081 Sed-Chr12:31556799 Sed13g1831 Sed-Chr13:23247158 4.10E-26 dispersed
Sed12g2081 Sed-Chr12:31556799 Sed08g0365 Sed-Chr8:2197076 4.30E-100 wgd
Sed12g2081 Sed-Chr12:31556799 Sed08g2182 Sed-Chr8:35745054 5.60E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40279 PF00010 HLH 4.40E-05 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2081 - - - 0.0