Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed12g2088 ATGGCGACGCCGTTGACAGGGCTGCAGCACCGGGACGGCGGCGGAGGAGTGGCGTTTTTGGCTAATTCGGTTAATAAAATGGATTCCGCGGCGTCTCCGTCGTCGCCGAGTGATTGTTTGCGGACTTCCGAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATCCGTAATGAGCTCGATACGCTTCACCGGCTGGCCATGGCGTTCGCGACCGGCCAGCGAGCGGATATTCGTCCGCTGTTTGAGCGATATCATTTCTTGAGATCGATTTACAAGCATCACTCCAATGCTGAAGACGAGGTAATTTTTTCTGCACTTGATATTCGTGTGAAGAATGTAGCACAGACATATTCCCTTGAACACAAAGGTGAAAGCAATCTGTTTGATCATCTTTTTGAGCTTCTTAATTCCAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCATCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCCTCTCTCGTTTGGCAGTTCTTCTGTAGTATTCCTGTGTACATGATGGCTCAATTTCTCCCTTGGCTTTCATCTTCTGTTTCACCTGATGAGTTTCAGGATCTACAGAAATGTTTAAACACAGTAATCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGACGGAAGCGAGAAGTTGTGACAACGTATCAACAAGCCACTTTGATGATTCTCCAGTTGGATATCATATGAATCCCACTACTAGTACCTCACACCATCAAACCGAAAATGTAAACTGTGCTTGTGAATTGACCAGCCACGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATACATCGGATTATGTGGCAACTCATCCGATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTAAGGAGGCTAGGAAGATACAGCTTTCTGGGAACTTTAGTAATCTATCAACGTTTAATGAGAGGCTGCAATTTATTGCAGAAGTTTGCATTTTTCATAGTATTGCCGAGGACAAGGTAATTTTTCCTGCAGTAGATGGAGAGCTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAATCAATTCAATGAGTTTAGGCGCCTGATTGAAAATATTCAAAGTGAAGGAGCTACTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCCAGAAAGCACTTTAGTTTCAAGAGACAACGGGAACTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGCGTCTTGCCATGGCTAGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATGCTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAGTAACGGTTTGTGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTCAAAGGCTCATTGACATTGAAGAAGACATTGTTCAACCATCTTGTTCCTGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAACTAGATCCCGAAACTAATGTTAGTGTTAAGAAGCCAGCCATACGAAATGTTCCAATGCCATGCAAAATTTGTGATGACCGTATTGCTTCAGAGAATGTTATCCAGCAAAAGTGCTGTAGTGATCAGTCCTGCCGAGTTCCAGCTTTAGGGGTAAACATTAAGAATCTGGGGTTGAGTTCTATTTTCACATCCAAGTGTACGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGACAGTTCTTCTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAGGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGCACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAACGCTGAAGATGATATAGTATTTCCAGCACTTGAATCCAAGGAGGCATTGCATAATGTGAGTCACTCCTATACACTTGACCATAAGCAGGAGGAAAAACTATTTGAGGACATTTCATGTGTTCTCTCAGAGATTTCACTTCTACATGAAAGTCTGCATGCGGTTCCGTTGGATGAGAGTTTTTCTAGGAGTGATGTTGTCTTTGTGAATGGGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTTCCTTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGTATCATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCTCTCACTCAGGATGAACAGAATACTTTGATGGATACGTGGAAGCAGGCCACGAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTTCTTTAAAGGGTGAAACATCTGAAGCTAGTGTTGCTGAAAAAGATTCTGGCCTTATTGAGAGCTTGGATCAGAATGACCAAATGTTCAAACCTGGATGGAAAGATATTTTTCGCATGAACCAAAATGAGCTTGAATCAGAAATCAGAAAGGTGTATCAGGACTCGACTCTTGATCCACGGAGAAAAGCATATCTAGTGCAGAATCTTATGACCAGTCGTTGGATTGCTGCACAGCAAAAACTACCTCAAGCAAATGTCGAAGAAAATTCCAATGGTGAAGATGTAGTAGGACGAACACCATCTTTTCGCTGTGCCGAGAACAAAGTCTTTGGGTGTGAACACTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCGGAGATGATGTGTATGAACTGTCTAACAGTTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATATTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGTCTGTGTATCATTGCCCGTTTTGTAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGGTTTGCAATTGTTGCCTTGGGATAAAGCTGGAAAGCCATAAGTGTCTGGAGAAAAGTTTAGAGACGAACTGTCCCATCTGTTGTGATTTCTTATTCACATCCAGTGCAACAGTCAGACCGCTACCTTGTGGTCATTACATGCATTCAGCCTGCTTTCAGGCATACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCCTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCCGCTGAGGAGCTACCAGAAGAGTACAGGGATCGTTGCCAGGACGTATTGTGCAATGACTGTGAACGAAAAGGCACATCAAGGTTCCATTGGCTGTACCATAAATGTGGGTTTTGTGGATCATACAACACACGGGTTATCAAGAATGATATCCCACATGCCGTTGCTGGCTGCCCATCTTCGAATCAATGA 3768 42.94 MATPLTGLQHRDGGGGVAFLANSVNKMDSAASPSSPSDCLRTSESPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLNTVIPEEKLLQQVIFTWTEARSCDNVSTSHFDDSPVGYHMNPTTSTSHHQTENVNCACELTSHGKRKYLESSSDTSDYVATHPINEILFWHNAIKRELNDIAKEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEENQFNEFRRLIENIQSEGATSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLKNMQLAAPAKDAALVTLFSGWACKARSNGLCLSSRAVGCCAVQRLIDIEEDIVQPSCSCAPALIAREGPKLDPETNVSVKKPAIRNVPMPCKICDDRIASENVIQQKCCSDQSCRVPALGVNIKNLGLSSIFTSKCTRSLSPSSCAPSLNSSLFSWETDSSSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHAVPLDESFSRSDVVFVNGVGKDCNRKYNELATKLQGMCKSIRVSLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSSLKGETSEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEENSNGEDVVGRTPSFRCAENKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTVQPVGPICTTPSCNGLSMAKYYCNICKFFDDERSVYHCPFCNLCRVGKGLGIDFFHCMVCNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDVLCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDIPHAVAGCPSSNQ 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31605791 31617039 - Sed0007904.1 Sed12g2088 733044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed12g2088 1255 CDD Hr-like 311 439 - -
Sed12g2088 1255 CDD RING-H2_Pirh2-like 1132 1175 - -
Sed12g2088 1255 Gene3D nmb1532 protein domain like 310 457 - -
Sed12g2088 1255 Gene3D nmb1532 protein domain like 45 194 - -
Sed12g2088 1255 Coils Coil 381 401 - -
Sed12g2088 1255 FunFam Zinc finger protein-related isoform 1 1128 1177 - -
Sed12g2088 1255 Pfam Hemerythrin HHE cation binding domain 50 177 IPR012312 -
Sed12g2088 1255 Pfam Hemerythrin HHE cation binding domain 657 820 IPR012312 -
Sed12g2088 1255 Pfam Hemerythrin HHE cation binding domain 308 441 IPR012312 -
Sed12g2088 1255 SMART ring_2 1133 1174 IPR001841 -
Sed12g2088 1255 Pfam CHY zinc finger 1004 1072 IPR008913 GO:0008270(InterPro)
Sed12g2088 1255 SUPERFAMILY CHY zinc finger-like 998 1060 IPR037274 GO:0008270(InterPro)
Sed12g2088 1255 Gene3D nmb1532 protein domain like 652 883 - -
Sed12g2088 1255 SUPERFAMILY RING/U-box 1132 1178 - -
Sed12g2088 1255 CDD Hr-like 659 819 - -
Sed12g2088 1255 ProSiteProfiles Zinc finger RING-type profile. 1133 1175 IPR001841 -
Sed12g2088 1255 ProSiteProfiles Zinc finger CTCHY-type profile. 1069 1132 IPR017921 -
Sed12g2088 1255 Pfam Ring finger domain 1132 1174 IPR001841 -
Sed12g2088 1255 ProSiteProfiles Zinc finger CHY-type profile. 997 1066 IPR008913 GO:0008270(InterPro)
Sed12g2088 1255 SUPERFAMILY Zinc hairpin stack 1070 1126 IPR037275 -
Sed12g2088 1255 CDD Hr-like 49 175 - -
Sed12g2088 1255 Gene3D - 1204 1244 - -
Sed12g2088 1255 Pfam Zinc-ribbon 1180 1237 IPR039512 -
Sed12g2088 1255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1126 1177 IPR013083 -
Sed12g2088 1255 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 692 1239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g1907 Sed-Chr6:43421790 Sed12g2088 Sed-Chr12:31605791 0.00E+00 dispersed
Sed08g0191 Sed-Chr8:1052144 Sed12g2088 Sed-Chr12:31605791 8.80E-231 dispersed
Sed12g1923 Sed-Chr12:30380791 Sed12g2088 Sed-Chr12:31605791 5.30E-228 dispersed
Sed12g2088 Sed-Chr12:31605791 Sed14g0367 Sed-Chr14:3844489 4.40E-41 dispersed
Sed12g2088 Sed-Chr12:31605791 Sed12g2089 Sed-Chr12:31605791 0.00E+00 tandem
Sed12g2088 Sed-Chr12:31605791 Sed06g1906 Sed-Chr6:43421790 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed12g2088 K16276 - csv:101215023 2337.38