Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed12g2088 | ATGGCGACGCCGTTGACAGGGCTGCAGCACCGGGACGGCGGCGGAGGAGTGGCGTTTTTGGCTAATTCGGTTAATAAAATGGATTCCGCGGCGTCTCCGTCGTCGCCGAGTGATTGTTTGCGGACTTCCGAGTCTCCGATTCTTATTTTCCTTTTCTTTCACAAAGCAATCCGTAATGAGCTCGATACGCTTCACCGGCTGGCCATGGCGTTCGCGACCGGCCAGCGAGCGGATATTCGTCCGCTGTTTGAGCGATATCATTTCTTGAGATCGATTTACAAGCATCACTCCAATGCTGAAGACGAGGTAATTTTTTCTGCACTTGATATTCGTGTGAAGAATGTAGCACAGACATATTCCCTTGAACACAAAGGTGAAAGCAATCTGTTTGATCATCTTTTTGAGCTTCTTAATTCCAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCATCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAGGCCTCTCTCGTTTGGCAGTTCTTCTGTAGTATTCCTGTGTACATGATGGCTCAATTTCTCCCTTGGCTTTCATCTTCTGTTTCACCTGATGAGTTTCAGGATCTACAGAAATGTTTAAACACAGTAATCCCCGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGACGGAAGCGAGAAGTTGTGACAACGTATCAACAAGCCACTTTGATGATTCTCCAGTTGGATATCATATGAATCCCACTACTAGTACCTCACACCATCAAACCGAAAATGTAAACTGTGCTTGTGAATTGACCAGCCACGGGAAAAGAAAATATTTGGAGTCAAGTTCTGATACATCGGATTATGTGGCAACTCATCCGATCAATGAAATACTGTTCTGGCATAATGCCATCAAAAGAGAGTTGAATGACATAGCTAAGGAGGCTAGGAAGATACAGCTTTCTGGGAACTTTAGTAATCTATCAACGTTTAATGAGAGGCTGCAATTTATTGCAGAAGTTTGCATTTTTCATAGTATTGCCGAGGACAAGGTAATTTTTCCTGCAGTAGATGGAGAGCTTTCTTTTCTCCAGGAACATGCTGAAGAAGAAAATCAATTCAATGAGTTTAGGCGCCTGATTGAAAATATTCAAAGTGAAGGAGCTACTTCTACTTCAAGAGCTGAATTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAGAGGCACTTTCATAATGAAGAAGTTCAGGTTCTTCCACTTGCCAGAAAGCACTTTAGTTTCAAGAGACAACGGGAACTATTGTATCAAAGCTTGTGCATGATGCCTTTGAAATTGATTGAACGCGTCTTGCCATGGCTAGTAGGATCATTGAAAGAAGATGAAGCTAGAGATCTTCTCAAGAACATGCAGTTGGCAGCTCCAGCTAAAGATGCTGCTCTGGTGACTCTCTTTTCTGGTTGGGCTTGCAAGGCCCGTAGTAACGGTTTGTGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTCAAAGGCTCATTGACATTGAAGAAGACATTGTTCAACCATCTTGTTCCTGTGCCCCTGCATTGATTGCAAGGGAAGGTCCAAAACTAGATCCCGAAACTAATGTTAGTGTTAAGAAGCCAGCCATACGAAATGTTCCAATGCCATGCAAAATTTGTGATGACCGTATTGCTTCAGAGAATGTTATCCAGCAAAAGTGCTGTAGTGATCAGTCCTGCCGAGTTCCAGCTTTAGGGGTAAACATTAAGAATCTGGGGTTGAGTTCTATTTTCACATCCAAGTGTACGCGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGACAGTTCTTCTTCTGATGTTGGGTCTGCAGGACGTCCCATTGATACTATTTTTAAATTTCACAAAGCTATACGCAAGGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGCACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCTCATAGTAACGCTGAAGATGATATAGTATTTCCAGCACTTGAATCCAAGGAGGCATTGCATAATGTGAGTCACTCCTATACACTTGACCATAAGCAGGAGGAAAAACTATTTGAGGACATTTCATGTGTTCTCTCAGAGATTTCACTTCTACATGAAAGTCTGCATGCGGTTCCGTTGGATGAGAGTTTTTCTAGGAGTGATGTTGTCTTTGTGAATGGGGTGGGGAAGGATTGTAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTTCCTTGGATCAGCATATTTTTAGGGAAGAACTTGAACTTTGGCCGCTGTTTGGGAAACACTTCTCTGTGGAGGAGCAAGACAAAATAGTTGGCCGTATCATTGGGACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCTGCTCTCACTCAGGATGAACAGAATACTTTGATGGATACGTGGAAGCAGGCCACGAAAAACACCATGTTCAATGAATGGCTCAATGAATGTTGGAGAGGGACTGCTTCGTCTTCTTTAAAGGGTGAAACATCTGAAGCTAGTGTTGCTGAAAAAGATTCTGGCCTTATTGAGAGCTTGGATCAGAATGACCAAATGTTCAAACCTGGATGGAAAGATATTTTTCGCATGAACCAAAATGAGCTTGAATCAGAAATCAGAAAGGTGTATCAGGACTCGACTCTTGATCCACGGAGAAAAGCATATCTAGTGCAGAATCTTATGACCAGTCGTTGGATTGCTGCACAGCAAAAACTACCTCAAGCAAATGTCGAAGAAAATTCCAATGGTGAAGATGTAGTAGGACGAACACCATCTTTTCGCTGTGCCGAGAACAAAGTCTTTGGGTGTGAACACTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACTTGTCGATTCTGTCATGACAATGTCAGCGATCACTCAATGGACAGGAAAGCAACATCGGAGATGATGTGTATGAACTGTCTAACAGTTCAACCAGTTGGGCCAATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATATTATTGCAATATTTGCAAATTTTTTGATGATGAAAGGTCTGTGTATCATTGCCCGTTTTGTAACTTATGCCGTGTTGGGAAGGGTCTTGGAATTGATTTTTTCCATTGCATGGTTTGCAATTGTTGCCTTGGGATAAAGCTGGAAAGCCATAAGTGTCTGGAGAAAAGTTTAGAGACGAACTGTCCCATCTGTTGTGATTTCTTATTCACATCCAGTGCAACAGTCAGACCGCTACCTTGTGGTCATTACATGCATTCAGCCTGCTTTCAGGCATACACTTGCAGCCATTATACCTGTCCTATTTGCAGCAAGTCCCTGGGAGATATGGCGGTTTATTTTGGCATGCTTGACGCCTTGTTGGCCGCTGAGGAGCTACCAGAAGAGTACAGGGATCGTTGCCAGGACGTATTGTGCAATGACTGTGAACGAAAAGGCACATCAAGGTTCCATTGGCTGTACCATAAATGTGGGTTTTGTGGATCATACAACACACGGGTTATCAAGAATGATATCCCACATGCCGTTGCTGGCTGCCCATCTTCGAATCAATGA | 3768 | 42.94 | MATPLTGLQHRDGGGGVAFLANSVNKMDSAASPSSPSDCLRTSESPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFSALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSPDEFQDLQKCLNTVIPEEKLLQQVIFTWTEARSCDNVSTSHFDDSPVGYHMNPTTSTSHHQTENVNCACELTSHGKRKYLESSSDTSDYVATHPINEILFWHNAIKRELNDIAKEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGELSFLQEHAEEENQFNEFRRLIENIQSEGATSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSLKEDEARDLLKNMQLAAPAKDAALVTLFSGWACKARSNGLCLSSRAVGCCAVQRLIDIEEDIVQPSCSCAPALIAREGPKLDPETNVSVKKPAIRNVPMPCKICDDRIASENVIQQKCCSDQSCRVPALGVNIKNLGLSSIFTSKCTRSLSPSSCAPSLNSSLFSWETDSSSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYTLDHKQEEKLFEDISCVLSEISLLHESLHAVPLDESFSRSDVVFVNGVGKDCNRKYNELATKLQGMCKSIRVSLDQHIFREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSSLKGETSEASVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANVEENSNGEDVVGRTPSFRCAENKVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTVQPVGPICTTPSCNGLSMAKYYCNICKFFDDERSVYHCPFCNLCRVGKGLGIDFFHCMVCNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDVLCNDCERKGTSRFHWLYHKCGFCGSYNTRVIKNDIPHAVAGCPSSNQ | 1255 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 31605791 | 31617039 | - | Sed0007904.1 | Sed12g2088 | 733044 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed12g2088 | 1255 | CDD | Hr-like | 311 | 439 | - | - | |
Sed12g2088 | 1255 | CDD | RING-H2_Pirh2-like | 1132 | 1175 | - | - | |
Sed12g2088 | 1255 | Gene3D | nmb1532 protein domain like | 310 | 457 | - | - | |
Sed12g2088 | 1255 | Gene3D | nmb1532 protein domain like | 45 | 194 | - | - | |
Sed12g2088 | 1255 | Coils | Coil | 381 | 401 | - | - | |
Sed12g2088 | 1255 | FunFam | Zinc finger protein-related isoform 1 | 1128 | 1177 | - | - | |
Sed12g2088 | 1255 | Pfam | Hemerythrin HHE cation binding domain | 50 | 177 | IPR012312 | - | |
Sed12g2088 | 1255 | Pfam | Hemerythrin HHE cation binding domain | 657 | 820 | IPR012312 | - | |
Sed12g2088 | 1255 | Pfam | Hemerythrin HHE cation binding domain | 308 | 441 | IPR012312 | - | |
Sed12g2088 | 1255 | SMART | ring_2 | 1133 | 1174 | IPR001841 | - | |
Sed12g2088 | 1255 | Pfam | CHY zinc finger | 1004 | 1072 | IPR008913 | GO:0008270(InterPro) | |
Sed12g2088 | 1255 | SUPERFAMILY | CHY zinc finger-like | 998 | 1060 | IPR037274 | GO:0008270(InterPro) | |
Sed12g2088 | 1255 | Gene3D | nmb1532 protein domain like | 652 | 883 | - | - | |
Sed12g2088 | 1255 | SUPERFAMILY | RING/U-box | 1132 | 1178 | - | - | |
Sed12g2088 | 1255 | CDD | Hr-like | 659 | 819 | - | - | |
Sed12g2088 | 1255 | ProSiteProfiles | Zinc finger RING-type profile. | 1133 | 1175 | IPR001841 | - | |
Sed12g2088 | 1255 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 1069 | 1132 | IPR017921 | - | |
Sed12g2088 | 1255 | Pfam | Ring finger domain | 1132 | 1174 | IPR001841 | - | |
Sed12g2088 | 1255 | ProSiteProfiles | Zinc finger CHY-type profile. | 997 | 1066 | IPR008913 | GO:0008270(InterPro) | |
Sed12g2088 | 1255 | SUPERFAMILY | Zinc hairpin stack | 1070 | 1126 | IPR037275 | - | |
Sed12g2088 | 1255 | CDD | Hr-like | 49 | 175 | - | - | |
Sed12g2088 | 1255 | Gene3D | - | 1204 | 1244 | - | - | |
Sed12g2088 | 1255 | Pfam | Zinc-ribbon | 1180 | 1237 | IPR039512 | - | |
Sed12g2088 | 1255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1126 | 1177 | IPR013083 | - | |
Sed12g2088 | 1255 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 692 | 1239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed06g1907 | Sed-Chr6:43421790 | Sed12g2088 | Sed-Chr12:31605791 | 0.00E+00 | dispersed | |
Sed08g0191 | Sed-Chr8:1052144 | Sed12g2088 | Sed-Chr12:31605791 | 8.80E-231 | dispersed | |
Sed12g1923 | Sed-Chr12:30380791 | Sed12g2088 | Sed-Chr12:31605791 | 5.30E-228 | dispersed | |
Sed12g2088 | Sed-Chr12:31605791 | Sed14g0367 | Sed-Chr14:3844489 | 4.40E-41 | dispersed | |
Sed12g2088 | Sed-Chr12:31605791 | Sed12g2089 | Sed-Chr12:31605791 | 0.00E+00 | tandem | |
Sed12g2088 | Sed-Chr12:31605791 | Sed06g1906 | Sed-Chr6:43421790 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed12g2088 | K16276 | - | csv:101215023 | 2337.38 |